Gene detail

Detail information of GWHGAAZE004672

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002263680.1	7.8069E-166	PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial [Vitis vinifera]
Swissprot	tr\|Q9C920\|KDSB_ARATH	4E-161	3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial (Precursor)
trEMBL	tr\|D7T0D4\|D7T0D4_VITVI	3E-166	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23963.3}
TAIR10	AT1G53000.1	2E-128	Nucleotide-diphospho-sugar transferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	120606177	120610621	+
GWHAAZE00000001	mRNA	120606177	120610621	+
GWHAAZE00000001	exon	120606177	120606444	+
GWHAAZE00000001	exon	120606531	120606576	+
GWHAAZE00000001	exon	120607559	120607642	+
GWHAAZE00000001	exon	120608900	120608986	+
GWHAAZE00000001	exon	120609071	120609195	+
GWHAAZE00000001	exon	120609520	120609659	+
GWHAAZE00000001	exon	120610036	120610087	+
GWHAAZE00000001	exon	120610185	120610295	+
GWHAAZE00000001	exon	120610502	120610621	+
GWHAAZE00000001	five_prime_UTR	120606177	120606207	+
GWHAAZE00000001	CDS	120606208	120606444	+
GWHAAZE00000001	CDS	120606531	120606576	+
GWHAAZE00000001	CDS	120607559	120607642	+
GWHAAZE00000001	CDS	120608900	120608986	+
GWHAAZE00000001	CDS	120609071	120609195	+
GWHAAZE00000001	CDS	120609520	120609659	+
GWHAAZE00000001	CDS	120610036	120610087	+
GWHAAZE00000001	CDS	120610185	120610295	+
GWHAAZE00000001	CDS	120610502	120610621	+

Transcript Sequence
>GWHTAAZE004678 GAAAAACCCCAACTGCAACGCCTAAGGGCGCATGAGTCCCGCGCAGATAACCCCTCCTCCGCCACCCTCCGGCGGCGACAGCACTTCATGGGGCCTGGTGGCTGCCGGAGCGGCCCTAGCTGTAGCTACAGGAGCATACATGGTATTATCCGTCCGGCGATCGGCCAAATTTAGGAGCCAAGTGGTGGGAATAATACCAGCTCGATATGCCTCCTCTAGATTCCAAGGCAAGCCTCTCGTTCCTATTATTGGGAAACCCATGATTCAGAGAACTTGGGAACAAGCAAAACTTGCTACCACATTGAACCAACTTGGTCAAAAGGAAGTTTACCGTGGAGTGCTTCCATACAAGAATGGACCACTTCAAAGGAATTCCACTATGCCAAAGAAACTTGAAATCGTGGCTACAGATGATGCGAAGATTGCAGAATGCTGTCGTGGATTTGGAGCTGATGTGATTATGACATCTGAATCTTGCCGGAATGGAACCGAACGCTGCAATGAGGCACTCCAAAAGCTTCAAAAAAAATTTGACATTGTTGTCAATATTCAGGGGGATGAGCCTCTTATTGAACCAGATATAATAGACGGGGTTGTTAAAGCTCTGCAGGCAACTCCAAATGCAGTATTTAGCACCGCAGTGACATCCTTAAGACCTGAAGATGCATCTGATCCAAATCGAGTGAAATGTATTGTAGATAATCGTGGTTATGCGATATATTTTTCGAGGGGACTTATCCCCTTTAACAAGTCGGGGAAGGTCAATCCGCACTTTCCGTATTTATTACATCTCGGTATCCAGAGCTATGATGCAAAGTTTCTAAAGATATATCCAGAGCTTTCACCCACTCCGCTGCAACTAGAAGAAGACCTGGAACAGCTTAAAGTCCTTGAGAATGGGTACAGAATGAAGGTTATCAAGGTTGACCACGAGGCGCATGGTGTTGACACTCCAGAAGACGTTGAGAAGATAGAATCTATAATGCGTGAAAGAAACCTGTCTGTAATTTATATAGCCATACGTGGGAGGTGA

Network for GWHGAAZE004672

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0007

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02348.20	CTP_transf_3	53	90	7.80E-10
PF02348.20	CTP_transf_3	123	290	2.60E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00979	kdsB	Metabolic pathways	map01100
K00979	kdsB	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

GO term	Ontology	Name
GO:0008690	molecular_function	3-deoxy-manno-octulosonate cytidylyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.347
	SRR3591706	second leaf	1.829
	SRR3591707	mature leaf	2.020
	SRR3591708	Shoot apex	4.635
	SRR3591709	Stem	5.162
	SRR3591710	White floral bud	18.315
	SRR3591711	White flower	18.294
	SRR3591712	Green floral bud	19.965
	SRR3591713	Yellow flower	23.183
SRP173429	SRR8316895	Juvenile bud stage	6.644
	SRR8316896	Juvenile bud stage	8.549
	SRR8316897	Juvenile bud stage	5.609
	SRR8316894	Third green stage	3.802
	SRR8316900	Third green stage	9.844
	SRR8316901	Third green stage	9.487
	SRR8316898	Complete white stage	5.720
	SRR8316899	Complete white stage	12.034
	SRR8316903	Complete white stage	4.930
	SRR8316902	Silver flowering stage	6.317
	SRR8316904	Silver flowering stage	8.147
	SRR8316905	Silver flowering stage	2.631
	SRR8316906	Gold flowering stage	10.848
	SRR8316907	Gold flowering stage	12.360
	SRR8316908	Gold flowering stage	16.792
SRP132670	SRR6706286	Control	8.886
	SRR6706287	Light intensity 50%	7.256
	SRR6706288	Light intensity 20%	8.645
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.463
	CNS0095593	Slightly white alabastrum(diploid) 2	13.286
	CNS0095594	Slightly white alabastrum(diploid) 3	14.493
	CNS0095595	Whole white alabastrum(diploid) 2	12.587
	CNS0095596	Whole white alabastrum(diploid) 3	15.666
	CNS0095597	Whole white alabastrum(diploid) 4	11.398
	CNS0095598	Silvery flower (diploied) 1	11.074
	CNS0095599	Silvery flower (diploied) 2	13.009
	CNS0095600	Silvery flower (diploied) 3	13.360
	CNS0095601	Golden flower (diploid) 1	7.832
	CNS0095602	Golden flower (diploid) 2	11.134
	CNS0095603	Golden flower (diploid) 3	10.649
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.692
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.817
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.906
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.541
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.866
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.820
	CNS0095610	Silvery flower (tetraploid) 1	32.676
	CNS0095611	Silvery flower (tetraploid) 2	32.494
	CNS0095612	Silvery flower (tetraploid) 3	38.280
	CNS0095613	Golden flower (tetraploid) 1	24.937
	CNS0095614	Golden flower (tetraploid) 2	30.310
	CNS0095615	Golden flower (tetraploid) 3	26.695
CRA001975	CRR073297	Stem 1	8.791
	CRR073298	Stem 2	7.133
	CRR073299	Stem 3	6.720
	CRR073300	Leaf 1	8.005
	CRR073301	Leaf 2	7.660
	CRR073302	Leaf 3	9.234
	CRR073303	Juvenile bud 1	9.130
	CRR073304	Juvenile bud 2	8.562
	CRR073305	Juvenile bud 3	6.920
	CRR073306	Third green 1	4.933
	CRR073307	Third green 2	5.094
	CRR073308	Third green 3	3.381
	CRR073309	Second white 1	5.376
	CRR073310	Second white 2	5.522
	CRR073311	Second white 3	6.071
	CRR073312	Silver flowering 1	6.176
	CRR073313	Silver flowering 2	5.316
	CRR073314	Silver flowering 3	2.772
	CRR073315	Gold flowering 1	2.279
	CRR073316	Gold flowering 2	5.847
	CRR073317	Gold flowering 3	2.701
	CRR073318	Tawny withering 1	5.265
	CRR073319	Tawny withering 2	5.808
	CRR073320	Tawny withering 3	6.267