Detail information of GWHGAAZE004676


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009339064.11.06311E-26PREDICTED: protein LOL2-like isoform X2 [Pyrus x bretschneideri]
Swissprottr|O65426|LOL2_ARATH2E-20Protein LOL2
trEMBLtr|E0CVZ1|E0CVZ1_VITVI1E-24Putative uncharacterized protein {ECO:0000313|EMBL:CBI23324.3}
TAIR10AT4G21610.12E-16lsd one like 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene120634570120634869+
GWHAAZE00000001mRNA120634570120634869+
GWHAAZE00000001exon120634570120634707+
GWHAAZE00000001exon120634798120634869+
GWHAAZE00000001CDS120634570120634707+
GWHAAZE00000001CDS120634798120634869+
Transcript Sequence

Network for GWHGAAZE004676

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06943.13zf-LSD118425.70E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-LSD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.648
SRR3591706second leaf16.639
SRR3591707mature leaf13.087
SRR3591708Shoot apex54.657
SRR3591709Stem28.060
SRR3591710White floral bud23.270
SRR3591711White flower26.449
SRR3591712Green floral bud25.512
SRR3591713Yellow flower12.140
SRP173429 SRR8316895Juvenile bud stage 25.363
SRR8316896Juvenile bud stage 27.226
SRR8316897Juvenile bud stage 14.896
SRR8316894Third green stage 9.507
SRR8316900Third green stage 24.130
SRR8316901Third green stage 27.694
SRR8316898Complete white stage 8.254
SRR8316899Complete white stage 26.173
SRR8316903Complete white stage 11.810
SRR8316902Silver flowering stage7.908
SRR8316904Silver flowering stage9.717
SRR8316905Silver flowering stage3.627
SRR8316906Gold flowering stage 11.117
SRR8316907Gold flowering stage 14.604
SRR8316908Gold flowering stage 14.276
SRP132670SRR6706286Control13.560
SRR6706287Light intensity 50%14.236
SRR6706288Light intensity 20%17.514
CNP0000432CNS0095592Slightly white alabastrum(diploid) 149.979
CNS0095593Slightly white alabastrum(diploid) 234.073
CNS0095594Slightly white alabastrum(diploid) 340.810
CNS0095595Whole white alabastrum(diploid) 228.655
CNS0095596Whole white alabastrum(diploid) 319.633
CNS0095597Whole white alabastrum(diploid) 421.258
CNS0095598Silvery flower (diploied) 129.573
CNS0095599Silvery flower (diploied) 227.886
CNS0095600Silvery flower (diploied) 318.452
CNS0095601Golden flower (diploid) 136.000
CNS0095602Golden flower (diploid) 215.725
CNS0095603Golden flower (diploid) 316.316
CNS0095604Slightly white alabastrum(tetraploid) 129.175
CNS0095605Slightly white alabastrum(tetraploid) 232.751
CNS0095606Slightly white alabastrum(tetraploid) 336.194
CNS0095607Whole white alabastrum(tetraploid) 118.096
CNS0095608Whole white alabastrum(tetraploid) 215.063
CNS0095609Whole white alabastrum(tetraploid) 316.099
CNS0095610Silvery flower (tetraploid) 117.174
CNS0095611Silvery flower (tetraploid) 218.310
CNS0095612Silvery flower (tetraploid) 313.438
CNS0095613Golden flower (tetraploid) 115.585
CNS0095614Golden flower (tetraploid) 215.841
CNS0095615Golden flower (tetraploid) 311.201
CRA001975CRR073297Stem 127.978
CRR073298Stem 224.794
CRR073299Stem 319.529
CRR073300Leaf 122.864
CRR073301Leaf 224.779
CRR073302Leaf 320.341
CRR073303Juvenile bud 123.905
CRR073304Juvenile bud 213.447
CRR073305Juvenile bud 324.892
CRR073306Third green 13.320
CRR073307Third green 25.441
CRR073308Third green 33.634
CRR073309Second white 16.160
CRR073310Second white 23.214
CRR073311Second white 34.202
CRR073312Silver flowering 13.402
CRR073313Silver flowering 20.866
CRR073314Silver flowering 31.965
CRR073315Gold flowering 111.636
CRR073316Gold flowering 210.388
CRR073317Gold flowering 311.980
CRR073318Tawny withering 122.058
CRR073319Tawny withering 217.792
CRR073320Tawny withering 320.500