Detail information of GWHGAAZE004680


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006449322.10hypothetical protein CICLE_v10014972mg [Citrus clementina]
Swissprottr|Q94AP0|ALN_ARATH0Allantoinase
trEMBLtr|V4U993|V4U993_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR62562.1}
TAIR10AT4G04955.10allantoinase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene120671609120683800-
GWHAAZE00000001mRNA120671609120683800-
GWHAAZE00000001exon120671609120671737-
GWHAAZE00000001exon120671981120672079-
GWHAAZE00000001exon120672284120672394-
GWHAAZE00000001exon120672652120672762-
GWHAAZE00000001exon120672852120673007-
GWHAAZE00000001exon120673335120673461-
GWHAAZE00000001exon120678972120679120-
GWHAAZE00000001exon120679621120679680-
GWHAAZE00000001exon120679955120680040-
GWHAAZE00000001exon120680123120680159-
GWHAAZE00000001exon120680813120680889-
GWHAAZE00000001exon120681200120681273-
GWHAAZE00000001exon120682019120682139-
GWHAAZE00000001exon120682833120682929-
GWHAAZE00000001exon120683687120683800-
GWHAAZE00000001five_prime_UTR120683780120683800-
GWHAAZE00000001CDS120683687120683779-
GWHAAZE00000001CDS120682833120682929-
GWHAAZE00000001CDS120682019120682139-
GWHAAZE00000001CDS120681200120681273-
GWHAAZE00000001CDS120680813120680889-
GWHAAZE00000001CDS120680123120680159-
GWHAAZE00000001CDS120679955120680040-
GWHAAZE00000001CDS120679621120679680-
GWHAAZE00000001CDS120678972120679120-
GWHAAZE00000001CDS120673335120673461-
GWHAAZE00000001CDS120672852120673007-
GWHAAZE00000001CDS120672652120672762-
GWHAAZE00000001CDS120672284120672394-
GWHAAZE00000001CDS120671981120672079-
GWHAAZE00000001CDS120671609120671737-
Transcript Sequence

Network for GWHGAAZE004680

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01979.21Amidohydro_1964903.40E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01466allB Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Purine metabolismmap00230

Gene Ontology

GO term OntologyName
GO:0000256biological_processallantoin catabolic process
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0004038molecular_functionallantoinase activity
GO:0008270molecular_functionzinc ion binding
GO:0050897molecular_functioncobalt ion binding
GO:0016787molecular_functionhydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.091
SRR3591706second leaf16.840
SRR3591707mature leaf18.731
SRR3591708Shoot apex16.946
SRR3591709Stem31.564
SRR3591710White floral bud16.451
SRR3591711White flower18.398
SRR3591712Green floral bud23.365
SRR3591713Yellow flower17.664
SRP173429 SRR8316895Juvenile bud stage 18.803
SRR8316896Juvenile bud stage 22.751
SRR8316897Juvenile bud stage 13.902
SRR8316894Third green stage 10.461
SRR8316900Third green stage 28.159
SRR8316901Third green stage 27.886
SRR8316898Complete white stage 9.474
SRR8316899Complete white stage 37.531
SRR8316903Complete white stage 14.348
SRR8316902Silver flowering stage9.769
SRR8316904Silver flowering stage13.987
SRR8316905Silver flowering stage6.334
SRR8316906Gold flowering stage 25.067
SRR8316907Gold flowering stage 24.724
SRR8316908Gold flowering stage 26.116
SRP132670SRR6706286Control20.406
SRR6706287Light intensity 50%22.880
SRR6706288Light intensity 20%24.479
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.836
CNS0095593Slightly white alabastrum(diploid) 217.944
CNS0095594Slightly white alabastrum(diploid) 314.956
CNS0095595Whole white alabastrum(diploid) 214.957
CNS0095596Whole white alabastrum(diploid) 314.560
CNS0095597Whole white alabastrum(diploid) 414.161
CNS0095598Silvery flower (diploied) 118.169
CNS0095599Silvery flower (diploied) 212.954
CNS0095600Silvery flower (diploied) 322.320
CNS0095601Golden flower (diploid) 114.459
CNS0095602Golden flower (diploid) 221.631
CNS0095603Golden flower (diploid) 321.546
CNS0095604Slightly white alabastrum(tetraploid) 120.264
CNS0095605Slightly white alabastrum(tetraploid) 216.356
CNS0095606Slightly white alabastrum(tetraploid) 328.952
CNS0095607Whole white alabastrum(tetraploid) 115.957
CNS0095608Whole white alabastrum(tetraploid) 212.248
CNS0095609Whole white alabastrum(tetraploid) 322.818
CNS0095610Silvery flower (tetraploid) 125.686
CNS0095611Silvery flower (tetraploid) 220.134
CNS0095612Silvery flower (tetraploid) 322.359
CNS0095613Golden flower (tetraploid) 112.511
CNS0095614Golden flower (tetraploid) 221.715
CNS0095615Golden flower (tetraploid) 319.212
CRA001975CRR073297Stem 124.946
CRR073298Stem 223.353
CRR073299Stem 317.707
CRR073300Leaf 130.565
CRR073301Leaf 223.572
CRR073302Leaf 324.166
CRR073303Juvenile bud 121.791
CRR073304Juvenile bud 218.570
CRR073305Juvenile bud 326.413
CRR073306Third green 16.746
CRR073307Third green 24.338
CRR073308Third green 35.710
CRR073309Second white 115.178
CRR073310Second white 210.428
CRR073311Second white 39.707
CRR073312Silver flowering 110.104
CRR073313Silver flowering 29.824
CRR073314Silver flowering 37.002
CRR073315Gold flowering 120.261
CRR073316Gold flowering 232.093
CRR073317Gold flowering 322.796
CRR073318Tawny withering 128.443
CRR073319Tawny withering 224.344
CRR073320Tawny withering 324.021