Detail information of GWHGAAZE004681


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003529317.11.2511E-157PREDICTED: uncharacterized protein LOC100777318 [Glycine max]
trEMBLtr|I1KLI6|I1KLI6_SOYBN5E-158Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G31510.1}
TAIR10AT3G47160.11E-79RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene120688861120692298-
GWHAAZE00000001mRNA120688861120692298-
GWHAAZE00000001exon120688861120688909-
GWHAAZE00000001exon120689164120689370-
GWHAAZE00000001exon120689505120689721-
GWHAAZE00000001exon120690604120690670-
GWHAAZE00000001exon120690777120690927-
GWHAAZE00000001exon120692219120692298-
GWHAAZE00000001CDS120692219120692298-
GWHAAZE00000001CDS120690777120690927-
GWHAAZE00000001CDS120690604120690670-
GWHAAZE00000001CDS120689505120689721-
GWHAAZE00000001CDS120689164120689370-
GWHAAZE00000001CDS120688861120688909-
Transcript Sequence

Network for GWHGAAZE004681

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf43.329
SRR3591706second leaf22.113
SRR3591707mature leaf21.773
SRR3591708Shoot apex41.472
SRR3591709Stem61.878
SRR3591710White floral bud39.565
SRR3591711White flower33.059
SRR3591712Green floral bud22.492
SRR3591713Yellow flower35.209
SRP173429 SRR8316895Juvenile bud stage 21.219
SRR8316896Juvenile bud stage 41.342
SRR8316897Juvenile bud stage 14.001
SRR8316894Third green stage 7.976
SRR8316900Third green stage 26.970
SRR8316901Third green stage 19.502
SRR8316898Complete white stage 17.703
SRR8316899Complete white stage 39.182
SRR8316903Complete white stage 26.160
SRR8316902Silver flowering stage19.672
SRR8316904Silver flowering stage27.932
SRR8316905Silver flowering stage16.262
SRR8316906Gold flowering stage 53.177
SRR8316907Gold flowering stage 50.570
SRR8316908Gold flowering stage 43.773
SRP132670SRR6706286Control27.839
SRR6706287Light intensity 50%22.727
SRR6706288Light intensity 20%21.056
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.144
CNS0095593Slightly white alabastrum(diploid) 218.871
CNS0095594Slightly white alabastrum(diploid) 315.239
CNS0095595Whole white alabastrum(diploid) 210.294
CNS0095596Whole white alabastrum(diploid) 312.036
CNS0095597Whole white alabastrum(diploid) 46.756
CNS0095598Silvery flower (diploied) 122.302
CNS0095599Silvery flower (diploied) 233.759
CNS0095600Silvery flower (diploied) 332.252
CNS0095601Golden flower (diploid) 139.073
CNS0095602Golden flower (diploid) 231.818
CNS0095603Golden flower (diploid) 332.954
CNS0095604Slightly white alabastrum(tetraploid) 113.786
CNS0095605Slightly white alabastrum(tetraploid) 212.009
CNS0095606Slightly white alabastrum(tetraploid) 322.620
CNS0095607Whole white alabastrum(tetraploid) 18.681
CNS0095608Whole white alabastrum(tetraploid) 26.814
CNS0095609Whole white alabastrum(tetraploid) 312.816
CNS0095610Silvery flower (tetraploid) 132.634
CNS0095611Silvery flower (tetraploid) 235.246
CNS0095612Silvery flower (tetraploid) 325.916
CNS0095613Golden flower (tetraploid) 122.014
CNS0095614Golden flower (tetraploid) 226.742
CNS0095615Golden flower (tetraploid) 320.355
CRA001975CRR073297Stem 138.906
CRR073298Stem 233.865
CRR073299Stem 324.463
CRR073300Leaf 135.609
CRR073301Leaf 229.929
CRR073302Leaf 324.506
CRR073303Juvenile bud 118.946
CRR073304Juvenile bud 212.639
CRR073305Juvenile bud 317.267
CRR073306Third green 15.288
CRR073307Third green 26.010
CRR073308Third green 36.135
CRR073309Second white 13.938
CRR073310Second white 28.351
CRR073311Second white 37.748
CRR073312Silver flowering 13.825
CRR073313Silver flowering 24.121
CRR073314Silver flowering 35.758
CRR073315Gold flowering 15.078
CRR073316Gold flowering 25.990
CRR073317Gold flowering 34.267
CRR073318Tawny withering 126.756
CRR073319Tawny withering 218.417
CRR073320Tawny withering 321.163