Gene detail

Detail information of GWHGAAZE004692

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009624321.1	4.7059E-151	PREDICTED: lactosylceramide 4-alpha-galactosyltransferase [Nicotiana tomentosiformis]
Swissprot	tr\|P0C8Q4\|Y4990_ARATH	3E-33	Uncharacterized protein At4g19900
trEMBL	tr\|B9HYL1\|B9HYL1_POPTR	2E-150	Uncharacterized protein {ECO:0000313\|EMBL:EEE97241.2}
TAIR10	AT1G61050.1	2E-96	alpha 1,4-glycosyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	120822419	120823255	+
GWHAAZE00000001	mRNA	120822419	120823255	+
GWHAAZE00000001	exon	120822419	120823255	+
GWHAAZE00000001	CDS	120822419	120823255	+

Transcript Sequence
>GWHTAAZE004698 ATGACTTGGATTTCTCCATCGGTGTCATTTGGTGACAGAGAACTTTTTGCAATTGAAACTTTGTTTAAGTCACACCCAAATGCCTGTTTGATAATTGTGTCGAATTCCATGGATTCAACAAGAGGAATGCAAATTCTAAAGCCTTTTTCGGATAATGGTTTTCGGGCAACTGCAATTTCGCCCGATTTCGATTATTTGTTCAAGAACACTGTGGCTGAAGCTTGGTTTGATCGGTTAAAGAGAGGAAATGTTGATCCGGGCGAGGTTTCTTTGGGTCAAAATCTCTCAAATTTGCTTAGGCTTGCTTTGTTGTACAAATATGGTGGAATTTATGTAGACACGGATGTTATAGTATTAAGGAGTTTTACAAGGCTGAGAAATGCAATTGGAGCACAGACTATGGATTTATCAACCAAAAAATGGAGCCGGTTGAATAATGCTGTGATGATATTTGATAAGGGGCATCCATTGCTTTACAAGTTCATTGAAGAATTTGCGCTCACATTTGATGGAAATAAATGGGGTCACAATGGCCCTTACTTGGTTTCGAGGGTTGTTTCGAGGGTAAATGGTAGACCTGGATATAATTTCACGGTCTTGCCACCGGTGGCATTTTATCCGGTTCATTGGAGTAGAATTCATAATATATTTCGGGGGCCTAGGGACAATAAGGACTCAAAATGGTTACTTGGTAAACTAAGGCATATTCAAAGCCAGAGCTTTGTAGTCCATCTTTGGAATAAACAAAGTAAAGGGCTTAATATCGAAGAAGGGAGCATCATCAGACAAATAATGTCGGATTATTGTGTCTTCTGCAATTCTTCAGAATCGTTGTAG

Network for GWHGAAZE004692

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04488.16	Gly_transf_sug	12	133	8.30E-23
PF04572.13	Gb3_synth	151	274	3.90E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01988	A4GALT	Metabolic pathways	map01100
		Glycosphingolipid biosynthesis - lacto and neolacto series	map00601
		Glycosphingolipid biosynthesis - globo and isoglobo series	map00603

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.188
	SRR3591706	second leaf	10.973
	SRR3591707	mature leaf	2.750
	SRR3591708	Shoot apex	6.988
	SRR3591709	Stem	2.426
	SRR3591710	White floral bud	4.454
	SRR3591711	White flower	1.841
	SRR3591712	Green floral bud	12.421
	SRR3591713	Yellow flower	3.217
SRP173429	SRR8316895	Juvenile bud stage	2.799
	SRR8316896	Juvenile bud stage	3.267
	SRR8316897	Juvenile bud stage	1.825
	SRR8316894	Third green stage	2.415
	SRR8316900	Third green stage	8.571
	SRR8316901	Third green stage	7.483
	SRR8316898	Complete white stage	0.391
	SRR8316899	Complete white stage	6.996
	SRR8316903	Complete white stage	0.772
	SRR8316902	Silver flowering stage	0.365
	SRR8316904	Silver flowering stage	0.088
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.509
	SRR8316907	Gold flowering stage	0.252
	SRR8316908	Gold flowering stage	0.760
SRP132670	SRR6706286	Control	5.530
	SRR6706287	Light intensity 50%	5.458
	SRR6706288	Light intensity 20%	6.271
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.782
	CNS0095593	Slightly white alabastrum(diploid) 2	3.814
	CNS0095594	Slightly white alabastrum(diploid) 3	2.435
	CNS0095595	Whole white alabastrum(diploid) 2	3.682
	CNS0095596	Whole white alabastrum(diploid) 3	4.191
	CNS0095597	Whole white alabastrum(diploid) 4	4.113
	CNS0095598	Silvery flower (diploied) 1	2.929
	CNS0095599	Silvery flower (diploied) 2	0.959
	CNS0095600	Silvery flower (diploied) 3	0.464
	CNS0095601	Golden flower (diploid) 1	3.176
	CNS0095602	Golden flower (diploid) 2	2.863
	CNS0095603	Golden flower (diploid) 3	2.778
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.381
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.692
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.843
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.779
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.006
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.776
	CNS0095610	Silvery flower (tetraploid) 1	0.392
	CNS0095611	Silvery flower (tetraploid) 2	0.889
	CNS0095612	Silvery flower (tetraploid) 3	0.575
	CNS0095613	Golden flower (tetraploid) 1	0.157
	CNS0095614	Golden flower (tetraploid) 2	0.446
	CNS0095615	Golden flower (tetraploid) 3	0.185
CRA001975	CRR073297	Stem 1	2.971
	CRR073298	Stem 2	4.100
	CRR073299	Stem 3	4.019
	CRR073300	Leaf 1	5.971
	CRR073301	Leaf 2	5.126
	CRR073302	Leaf 3	4.288
	CRR073303	Juvenile bud 1	3.852
	CRR073304	Juvenile bud 2	1.290
	CRR073305	Juvenile bud 3	4.220
	CRR073306	Third green 1	0.121
	CRR073307	Third green 2	0.017
	CRR073308	Third green 3	0.002
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.045
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.093
	CRR073315	Gold flowering 1	4.485
	CRR073316	Gold flowering 2	2.225
	CRR073317	Gold flowering 3	1.539
	CRR073318	Tawny withering 1	1.819
	CRR073319	Tawny withering 2	2.350
	CRR073320	Tawny withering 3	3.422