Gene detail

Detail information of GWHGAAZE004710

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010647331.1	0	PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog [Vitis vinifera]
Swissprot	tr\|Q8H0T9\|KTNB1_ARATH	7E-152	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255\|HAMAP-Rule:MF_03022}
trEMBL	tr\|B9S5Z3\|B9S5Z3_RICCO	0	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000256\|HAMAP-Rule:MF_03022}
TAIR10	AT1G61210.1	3E-168	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	121076213	121081377	+
GWHAAZE00000001	mRNA	121076213	121081377	+
GWHAAZE00000001	exon	121076213	121076353	+
GWHAAZE00000001	exon	121076910	121077027	+
GWHAAZE00000001	exon	121077637	121077863	+
GWHAAZE00000001	exon	121077938	121078040	+
GWHAAZE00000001	exon	121078169	121078239	+
GWHAAZE00000001	exon	121079221	121079295	+
GWHAAZE00000001	exon	121079382	121079525	+
GWHAAZE00000001	exon	121079656	121079860	+
GWHAAZE00000001	exon	121080157	121080747	+
GWHAAZE00000001	exon	121081060	121081116	+
GWHAAZE00000001	exon	121081199	121081377	+
GWHAAZE00000001	CDS	121076213	121076353	+
GWHAAZE00000001	CDS	121076910	121077027	+
GWHAAZE00000001	CDS	121077637	121077863	+
GWHAAZE00000001	CDS	121077938	121078040	+
GWHAAZE00000001	CDS	121078169	121078239	+
GWHAAZE00000001	CDS	121079221	121079295	+
GWHAAZE00000001	CDS	121079382	121079525	+
GWHAAZE00000001	CDS	121079656	121079860	+
GWHAAZE00000001	CDS	121080157	121080747	+
GWHAAZE00000001	CDS	121081060	121081116	+
GWHAAZE00000001	CDS	121081199	121081377	+

Transcript Sequence
>GWHTAAZE004716 ATGGATGTAGAGGAGTTTGCAGCGCATTCAGGGAGTGTGAACTGTTTAAGGATTGGGAAGAAGGCGTGTCGCCAATTTATTACCGGTGGAGATGATAAAAAAGTGAACCTTTGGTCTATTGGCAATCCGACTCCTTTGATGAGCCTATGTGGTCATACAAGTCCTGTAGAATCTTTAGCTTTTGATTCAGCAGAGGTTTTAGTGGCTGCTGGAGCTTCTGCTGGTGTGATAAAGCTGTGGGATTTGGAAGAAACAAAGGAGGTTCGCACTCTTACTGGTCACAAATCCTATTGCTCTGCTGTTGAATTCCATCCGTTTGGCCATTTTTTTGCATCTGGCTCCATGGACACTAATCTAAGGATCTGGGATATCAGAAAGAAGGAATGCATCCACACATACAAGGGTCACTCTGGGGGAATTAGTACCATTAGATTCACTCCTGATGGTCGGTGGGTAGTCTCTGGTGGATTGGATAATATTGTAAAGATATGGGACCTAACTGCTGGAAAGCTCTTACATGACTTTAAGTTCCATGAAGGACATATCCGATCAATGGATTTTCATCCGCTTGAGTTTCTCCTAGCAACAGGCTCAGCAGACAAAACTGTTAAATTTTGGGATTTGGAAACCTTTGAACTGATTGGATCTGCCAGACCTGAGGGTGCAGGAGTACAATCAGTTGCTTTTCACCCAGATGGGAGAGCCCTGTTTTGTGGATTGGATGACAGCTTAAAGGTTTATTCATGGGAGCCTTTATTTTGTCATGATTCTCTTGATATAGGATGGTCAACTCTTGGTGACCTCTGCATCCATGATGTAACACTGACGGGGTGCTCATATTATCAAAATTCTATTGGAGTTTGGGTAGCAGATATTTCCCTTATTGATCCATATGAAGCTAGTTTGGTACCTGAGCAAAATATTCACTCTGAGCAGAAGTTCGAGAATCTGGAAAGCCCATTAGATAAACAAGGGAGCCATAGAAGGTCTACTTCAAGTTTGCGCTGCACATCTCCAGATTACGAGACTAAAGAAATTAAGAACATATATATTGACAGTAAGTTTGTAATCTTCGTGGTTTCATCTGCAGGTGGAAATCCAGTCACTTCAAGAAAAGTTGGGTCTTTTAATTCTCCGAAGGTTGCACGCACATCTGTTCCAAAGGAAATCAGCAAATCGATGACTCAGAATCAAATTCCTGCTGCTGGCTTGAATGCAAAGACTATTGGGAAACCCAAAAATAAATCCTTCACGGTTCCTAAAGTTATGCCTTGGGACAATCTTGATGGAAAAGAAACTACCAAATCTAGAAGACAATCTATTACCAGTGCAAGGACCGCCACTGCTATGTCAGTCAAGCCAGCTCATAAACGGAGGCCATCATCAGTTACCAAATTGGATGTGGACAGGCTATCAATGACTGCTGAATCTTTATCTTTCCATGATCTGAAGAGTCCGTTAGACTCTACTGCAGATATGAACTTCCATAGAGGGTTATCTTTTCATGATATGAAGAGTCCGTTAGACAGTACTGTAGATATGAACTTCCATAAAAGGCTTGTACCAGATGATAATGCTAAGGAATTCTCTGAGGAAAAACCATGTAACACTACCAGTGTTGTGGAGACATTTGAAAAGGTTTTCACACCAAGGATGCCTTCTAGTCACAAAAACTGTGCTGAGTCTGTCGATAGCTACAAGGGGACAAAATCCGTAAAATATGTCAATGGAGTGGCTATAGTGCATGGAAGGACACGTAGCCTTGTTGACAGGTTTGAAAAGAGAGAAATTCCGAATAGTGATGAAGTTCCCTCAACTGATACAGCCCCTCACACAATACCCGGAACAGCTAAGGCATCCCCAGTGGTGGTAGGATTTTGTTACCCTTTTACTGTTTACCCTTTATGCTAG

Network for GWHGAAZE004710

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	6	39	0.16
PF00400.33	WD40	45	81	0.0045
PF00400.33	WD40	86	123	5.30E-08
PF00400.33	WD40	128	165	8.50E-11
PF00400.33	WD40	169	207	3.50E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0051013	biological_process	microtubule severing
GO:0008352	cellular_component	katanin complex
GO:0005515	molecular_function	protein binding
GO:0008017	molecular_function	microtubule binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.292
	SRR3591706	second leaf	6.501
	SRR3591707	mature leaf	4.924
	SRR3591708	Shoot apex	7.519
	SRR3591709	Stem	9.748
	SRR3591710	White floral bud	9.740
	SRR3591711	White flower	15.099
	SRR3591712	Green floral bud	8.199
	SRR3591713	Yellow flower	13.418
SRP173429	SRR8316895	Juvenile bud stage	4.059
	SRR8316896	Juvenile bud stage	6.335
	SRR8316897	Juvenile bud stage	3.682
	SRR8316894	Third green stage	3.093
	SRR8316900	Third green stage	8.388
	SRR8316901	Third green stage	8.421
	SRR8316898	Complete white stage	6.063
	SRR8316899	Complete white stage	14.716
	SRR8316903	Complete white stage	10.589
	SRR8316902	Silver flowering stage	4.841
	SRR8316904	Silver flowering stage	8.949
	SRR8316905	Silver flowering stage	3.878
	SRR8316906	Gold flowering stage	15.715
	SRR8316907	Gold flowering stage	12.953
	SRR8316908	Gold flowering stage	12.650
SRP132670	SRR6706286	Control	5.223
	SRR6706287	Light intensity 50%	7.489
	SRR6706288	Light intensity 20%	6.565
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.655
	CNS0095593	Slightly white alabastrum(diploid) 2	4.316
	CNS0095594	Slightly white alabastrum(diploid) 3	3.716
	CNS0095595	Whole white alabastrum(diploid) 2	3.621
	CNS0095596	Whole white alabastrum(diploid) 3	3.358
	CNS0095597	Whole white alabastrum(diploid) 4	3.495
	CNS0095598	Silvery flower (diploied) 1	6.824
	CNS0095599	Silvery flower (diploied) 2	4.598
	CNS0095600	Silvery flower (diploied) 3	10.721
	CNS0095601	Golden flower (diploid) 1	6.273
	CNS0095602	Golden flower (diploid) 2	11.846
	CNS0095603	Golden flower (diploid) 3	9.568
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.678
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.814
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.262
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.363
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.598
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.988
	CNS0095610	Silvery flower (tetraploid) 1	11.476
	CNS0095611	Silvery flower (tetraploid) 2	12.338
	CNS0095612	Silvery flower (tetraploid) 3	10.847
	CNS0095613	Golden flower (tetraploid) 1	6.209
	CNS0095614	Golden flower (tetraploid) 2	10.180
	CNS0095615	Golden flower (tetraploid) 3	9.398
CRA001975	CRR073297	Stem 1	6.532
	CRR073298	Stem 2	5.118
	CRR073299	Stem 3	3.343
	CRR073300	Leaf 1	7.675
	CRR073301	Leaf 2	4.265
	CRR073302	Leaf 3	2.956
	CRR073303	Juvenile bud 1	3.684
	CRR073304	Juvenile bud 2	3.095
	CRR073305	Juvenile bud 3	4.790
	CRR073306	Third green 1	1.550
	CRR073307	Third green 2	1.679
	CRR073308	Third green 3	1.999
	CRR073309	Second white 1	1.771
	CRR073310	Second white 2	3.581
	CRR073311	Second white 3	3.127
	CRR073312	Silver flowering 1	2.472
	CRR073313	Silver flowering 2	1.642
	CRR073314	Silver flowering 3	2.008
	CRR073315	Gold flowering 1	1.489
	CRR073316	Gold flowering 2	2.850
	CRR073317	Gold flowering 3	1.696
	CRR073318	Tawny withering 1	4.814
	CRR073319	Tawny withering 2	3.923
	CRR073320	Tawny withering 3	2.778