Gene detail

Detail information of GWHGAAZE004723

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003635314.1	4.4045E-164	PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Vitis vinifera]
Swissprot	tr\|Q9FL69\|AGD5_ARATH	6E-134	Probable ADP-ribosylation factor GTPase-activating protein AGD5
trEMBL	tr\|E0CW29\|E0CW29_VITVI	2E-164	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23473.3}
TAIR10	AT5G54310.1	4E-105	ARF-GAP domain 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	121203220	121207146	+
GWHAAZE00000001	mRNA	121203220	121207146	+
GWHAAZE00000001	exon	121203220	121203270	+
GWHAAZE00000001	exon	121204754	121204812	+
GWHAAZE00000001	exon	121204923	121205013	+
GWHAAZE00000001	exon	121205250	121205304	+
GWHAAZE00000001	exon	121205428	121205518	+
GWHAAZE00000001	exon	121205630	121205855	+
GWHAAZE00000001	exon	121205944	121206169	+
GWHAAZE00000001	exon	121206322	121206494	+
GWHAAZE00000001	exon	121206603	121206898	+
GWHAAZE00000001	exon	121206993	121207146	+
GWHAAZE00000001	CDS	121203220	121203270	+
GWHAAZE00000001	CDS	121204754	121204812	+
GWHAAZE00000001	CDS	121204923	121205013	+
GWHAAZE00000001	CDS	121205250	121205304	+
GWHAAZE00000001	CDS	121205428	121205518	+
GWHAAZE00000001	CDS	121205630	121205855	+
GWHAAZE00000001	CDS	121205944	121206169	+
GWHAAZE00000001	CDS	121206322	121206494	+
GWHAAZE00000001	CDS	121206603	121206898	+
GWHAAZE00000001	CDS	121206993	121207146	+

Transcript Sequence
>GWHTAAZE004729 ATGAACCAGAAAGCCGGCGTTTCCAAAGAGCTTAATGCAAAACACAGAAAGATACTTGAGGGGATTCTTAAATTACCAGAGAATAGGGAATGCGCTGACTGCAAAAGCAAAAGTCCAAGATGGGCTAGTGTTAATCTGGGGATATTCATATGCATGCAATGTTCTGGGATTCACAGAAGTCTCGGAGTACACATATCAAAGGTGAGATCTGCTACACTGGACACATGGCTTCCAGATCAGATTGCGTTTATCCAATCAATGGGAAATGAAAAATCAAATAGCTACTGGGAGGCCGAGTTGCCTCCTAAATATGACAGAGTTGGGATCGAGAACTTCATCCGTGCAAAGTATGAAGACAAGAGATGGATTCCTAGGGATGGAAAAGCAAAATTACCTTCAAAAGTAAGAGAAGAGAAGACTCCAGTTAATAATCGAGGACCTGGCATTGGATATAGCACTAGTATTGAACATTTCACCGAGGAGAGGAAAAGCCCTCAGCAGCACAATACAGACAGAATTGTTCCTTCTCAAAGTAGTGCTTCTGTCCCTCCTAGAAAACTTGTGCAGGTAGATGTGAGTCCTGATTCAAAACTGAAAGAAGTCCATCAGAAATCAGAACCGCCAACCTCAAAGCCCGAATTGGAAAAGAGAGAAGCCAATAATAAGATCCCAGTAGTTACATCTACTCCAAAAGTTGACTATGCTACTGATCTTTTCAACTTGCTCTCCATGGACGATTCTAGAGAAAATGGCTCCACAACATTGGCTGCTAATGATAATTCCTGGGCACGATTCCAGTCAACAGATGCAACATCGGCAGCAGAGGAAAGTGTTTCTTCAATAGAGAAAATCAAGAACCAGCCCAACTCTGAATTCGAGGATCTATTTCAAGATCTACAGTGGGTTGCACCGCCCCTTGCCAAGGAACCAGCAAAAGTTGTGAAGAACGACATCATCAACCTTTTTGAGAAGTCCAGTATGGTGTCGCCATTTTCCGTCCATCAACAACAACTTGCAGTGCTAGCTCAACAGCAGTCAAATATCATGACTTCAGCGGGAAAGCCTAGTGGGGGGTCCCAAATGTTTTCTTCAAATACGCCTCAATTTAGCTCCAATGGCGTTCACTTAACCCCACAGAATTGGGGAAGCATTGGCAATCAAGCTTCTAGAACGATGATGCCAGCATCCGGTCTACATAATATGCAGATGGGAAACAACATGCCTTCTTCACATCCTGCTGGAAGTTTTGCTCCTTATCCAACACCAAGCATGTTTAGTACAGGACCAGTAGCTCCTGTAGGCGGCATTACAACATCCGTGAGGACTAGTAGGCCTCCCACAGCACAACCCATCATCCCGTCTCAACTGGGAGGAGAGTATGATTTCTCATCATTACTGCAAGGGACGTTTACTAAGCGGTGA

Network for GWHGAAZE004723

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01412.19	ArfGap	17	123	9.40E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12486	SMAP	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005096	molecular_function	GTPase activator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.339
	SRR3591706	second leaf	8.803
	SRR3591707	mature leaf	9.651
	SRR3591708	Shoot apex	10.772
	SRR3591709	Stem	30.036
	SRR3591710	White floral bud	16.882
	SRR3591711	White flower	11.592
	SRR3591712	Green floral bud	10.292
	SRR3591713	Yellow flower	11.231
SRP173429	SRR8316895	Juvenile bud stage	8.967
	SRR8316896	Juvenile bud stage	10.255
	SRR8316897	Juvenile bud stage	5.262
	SRR8316894	Third green stage	3.052
	SRR8316900	Third green stage	8.239
	SRR8316901	Third green stage	12.537
	SRR8316898	Complete white stage	5.461
	SRR8316899	Complete white stage	42.179
	SRR8316903	Complete white stage	8.607
	SRR8316902	Silver flowering stage	5.121
	SRR8316904	Silver flowering stage	5.863
	SRR8316905	Silver flowering stage	3.348
	SRR8316906	Gold flowering stage	10.009
	SRR8316907	Gold flowering stage	7.382
	SRR8316908	Gold flowering stage	11.242
SRP132670	SRR6706286	Control	6.333
	SRR6706287	Light intensity 50%	8.505
	SRR6706288	Light intensity 20%	7.218
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.322
	CNS0095593	Slightly white alabastrum(diploid) 2	15.629
	CNS0095594	Slightly white alabastrum(diploid) 3	10.702
	CNS0095595	Whole white alabastrum(diploid) 2	10.773
	CNS0095596	Whole white alabastrum(diploid) 3	3.189
	CNS0095597	Whole white alabastrum(diploid) 4	8.698
	CNS0095598	Silvery flower (diploied) 1	10.395
	CNS0095599	Silvery flower (diploied) 2	4.989
	CNS0095600	Silvery flower (diploied) 3	11.683
	CNS0095601	Golden flower (diploid) 1	9.200
	CNS0095602	Golden flower (diploid) 2	11.156
	CNS0095603	Golden flower (diploid) 3	10.860
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.587
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.343
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.526
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.251
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.190
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.431
	CNS0095610	Silvery flower (tetraploid) 1	4.800
	CNS0095611	Silvery flower (tetraploid) 2	4.168
	CNS0095612	Silvery flower (tetraploid) 3	6.015
	CNS0095613	Golden flower (tetraploid) 1	3.216
	CNS0095614	Golden flower (tetraploid) 2	4.261
	CNS0095615	Golden flower (tetraploid) 3	5.467
CRA001975	CRR073297	Stem 1	9.285
	CRR073298	Stem 2	6.372
	CRR073299	Stem 3	5.626
	CRR073300	Leaf 1	15.061
	CRR073301	Leaf 2	17.032
	CRR073302	Leaf 3	9.284
	CRR073303	Juvenile bud 1	11.959
	CRR073304	Juvenile bud 2	10.037
	CRR073305	Juvenile bud 3	19.870
	CRR073306	Third green 1	8.970
	CRR073307	Third green 2	12.357
	CRR073308	Third green 3	12.107
	CRR073309	Second white 1	4.124
	CRR073310	Second white 2	6.094
	CRR073311	Second white 3	4.794
	CRR073312	Silver flowering 1	6.441
	CRR073313	Silver flowering 2	6.393
	CRR073314	Silver flowering 3	5.587
	CRR073315	Gold flowering 1	18.919
	CRR073316	Gold flowering 2	41.716
	CRR073317	Gold flowering 3	14.112
	CRR073318	Tawny withering 1	37.146
	CRR073319	Tawny withering 2	46.684
	CRR073320	Tawny withering 3	39.258