Gene detail

Detail information of GWHGAAZE004733

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFK24440.1	4.28804E-60	HSFA9 [Coffea arabica]
Swissprot	tr\|O80982\|HSFA2_ARATH	5E-52	Heat stress transcription factor A-2
trEMBL	tr\|I3RJG0\|I3RJG0_COFAR	2E-60	HSFA9 {ECO:0000313\|EMBL:AFK24440.1}
TAIR10	AT2G26150.1	3E-35	heat shock transcription factor A2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	121354298	121356026	+
GWHAAZE00000001	mRNA	121354298	121356026	+
GWHAAZE00000001	exon	121354298	121354732	+
GWHAAZE00000001	exon	121355316	121356026	+
GWHAAZE00000001	CDS	121354298	121354732	+
GWHAAZE00000001	CDS	121355316	121356026	+

Transcript Sequence
>GWHTAAZE004739 ATGGCTACTTCTGATGTGGCTGGTGGTAGCAATGCTGATTCTCAGGCAATAGAGCTCAAAGAGAGCAATAGAATAGAAGATATAACAACACCTAAAGAAGTTCACACAGTTGTGCTTGTTGAATCTGATCATGAAGCTGCTGCGTTTGATGGTGCTGGTAGTGGTGGCGGCATTGGCGGTGAGTCATCTTCGACGTCATTGCTAACTTCAATGCCAAAACCGAAGTCAAAAGGGGTGAGGGAGGGTGGTCCACCGCCATTCTTGACGAAGACCTATGAAATGGTGGAGGACCCAGAAACAAACTCCATCATCTCATGGAGTTCAAGCGGCGACAGCTTCATAGTTTGGAACTCCTACAAACTGTGTACAGAACTATTCCCCATGTACTTCAGGCACGACAATTTGTCAAGCTTCATTTACCAACTCAACAATTATGGTTTCAGAAAGATCAGTTGGGAACGTTCCGAATATGCGCATCAATATTTTCAAGCAGGACAGGAACACTTGCTGAAGAACATCAGGAGGAGGAACCAACCACCACCAAGAGTATCAAGAATGCCGTCTTCCCTTGATCTTTCTGAGAAATCAAGACTTGAAACCCAGCTGCTAAATTTAAGGAAAGAACACAACAAACTCAAACAGTTGATCATAAACCTACAACAGAAACAACAGAACATGGGCAAGAATTTAACCGCCTTCAAAGCTCGCATGGAAAGTTCAATCTCTAAACAACAAAAAATGGTGGCCTTATTGGCCGATACATTCACCCCATCCTTTCTTCAAGAGCTCAAGGAGAAAAGGGAACTGAATAAAGATCGTGAAGAGACCTCAAAGAGGCAGAAATTGGGTGCAGCAGAGAATACAGAGATGTTGGTGGAGCCTATTCAAGTTCAAGAAGATCATAATAAGGTCAATAATGAAGTGTTTGATACTAATATTCGAGTTTTGAATTCTGAGAGGTATGCAATGTGGGAGAAGCAAATGGAGGATGATCTCAACTGTAAGACTGAGGAAGCAAAAGAAGAACTAGCAAATGAGCAATCGAAGAAGATCGTTTTGGAACTTGAGGATTTGATTGGTCGTCCAGCGGATTGGGGATACATGAAGGAGCTAATGGAGGAAGCGGGTTGTCCTCAAGGATTTTGA

Network for GWHGAAZE004733

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00447.18	HSF_DNA-bind	87	176	1.40E-27

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.444
	SRR3591706	second leaf	0.703
	SRR3591707	mature leaf	0.982
	SRR3591708	Shoot apex	0.986
	SRR3591709	Stem	0.450
	SRR3591710	White floral bud	0.889
	SRR3591711	White flower	1.769
	SRR3591712	Green floral bud	0.402
	SRR3591713	Yellow flower	3.118
SRP173429	SRR8316895	Juvenile bud stage	0.687
	SRR8316896	Juvenile bud stage	1.376
	SRR8316897	Juvenile bud stage	1.067
	SRR8316894	Third green stage	0.223
	SRR8316900	Third green stage	0.108
	SRR8316901	Third green stage	0.576
	SRR8316898	Complete white stage	0.109
	SRR8316899	Complete white stage	0.533
	SRR8316903	Complete white stage	0.150
	SRR8316902	Silver flowering stage	1.097
	SRR8316904	Silver flowering stage	0.465
	SRR8316905	Silver flowering stage	0.266
	SRR8316906	Gold flowering stage	3.269
	SRR8316907	Gold flowering stage	1.600
	SRR8316908	Gold flowering stage	1.481
SRP132670	SRR6706286	Control	0.057
	SRR6706287	Light intensity 50%	0.102
	SRR6706288	Light intensity 20%	0.134
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.821
	CNS0095593	Slightly white alabastrum(diploid) 2	1.059
	CNS0095594	Slightly white alabastrum(diploid) 3	1.370
	CNS0095595	Whole white alabastrum(diploid) 2	0.619
	CNS0095596	Whole white alabastrum(diploid) 3	0.150
	CNS0095597	Whole white alabastrum(diploid) 4	0.248
	CNS0095598	Silvery flower (diploied) 1	0.309
	CNS0095599	Silvery flower (diploied) 2	1.130
	CNS0095600	Silvery flower (diploied) 3	0.513
	CNS0095601	Golden flower (diploid) 1	0.264
	CNS0095602	Golden flower (diploid) 2	0.228
	CNS0095603	Golden flower (diploid) 3	0.920
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.548
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.245
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.174
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.336
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.552
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.155
	CNS0095610	Silvery flower (tetraploid) 1	0.912
	CNS0095611	Silvery flower (tetraploid) 2	0.313
	CNS0095612	Silvery flower (tetraploid) 3	0.923
	CNS0095613	Golden flower (tetraploid) 1	0.827
	CNS0095614	Golden flower (tetraploid) 2	0.455
	CNS0095615	Golden flower (tetraploid) 3	0.706
CRA001975	CRR073297	Stem 1	0.530
	CRR073298	Stem 2	0.454
	CRR073299	Stem 3	0.294
	CRR073300	Leaf 1	1.234
	CRR073301	Leaf 2	0.838
	CRR073302	Leaf 3	0.005
	CRR073303	Juvenile bud 1	0.075
	CRR073304	Juvenile bud 2	0.025
	CRR073305	Juvenile bud 3	0.430
	CRR073306	Third green 1	0.090
	CRR073307	Third green 2	0.034
	CRR073308	Third green 3	0.036
	CRR073309	Second white 1	1.044
	CRR073310	Second white 2	0.957
	CRR073311	Second white 3	0.934
	CRR073312	Silver flowering 1	0.916
	CRR073313	Silver flowering 2	1.346
	CRR073314	Silver flowering 3	1.414
	CRR073315	Gold flowering 1	0.233
	CRR073316	Gold flowering 2	0.415
	CRR073317	Gold flowering 3	0.037
	CRR073318	Tawny withering 1	0.266
	CRR073319	Tawny withering 2	0.488
	CRR073320	Tawny withering 3	1.003