Gene detail

Detail information of GWHGAAZE004737

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009801248.1	7.9248E-138	PREDICTED: protein ODORANT1-like [Nicotiana sylvestris]
Swissprot	tr\|Q8GWP0\|MYB39_ARATH	2E-47	Transcription factor MYB39
trEMBL	tr\|V4U8Y8\|V4U8Y8_9ROSI	1E-124	Uncharacterized protein {ECO:0000313\|EMBL:ESR62437.1}
TAIR10	AT4G21440.1	2E-48	MYB-like 102

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	121429354	121430788	+
GWHAAZE00000001	mRNA	121429354	121430788	+
GWHAAZE00000001	exon	121429354	121429486	+
GWHAAZE00000001	exon	121429722	121429764	+
GWHAAZE00000001	exon	121429972	121430788	+
GWHAAZE00000001	CDS	121429354	121429486	+
GWHAAZE00000001	CDS	121429722	121429764	+
GWHAAZE00000001	CDS	121429972	121430788	+

Transcript Sequence
>GWHTAAZE004743 ATGGGAAGAGCACCTTGTTGTGACAAAAATGGGCTTAAAAAAGGTCCCTGGACTACCGAAGAAGATGAGAAACTTATGGATTACATTCAAAAGAATGGCTATGGTAACTGGAGAACCCTCCCTAAAAATGCTGAGGAAGAGACAATTATTCAGCTACATAGCGTTTTGGGAAACAAGTGGTCGGCCATTGCTGCTCGTCTACCAGGAAGAACTGATAATGAAATTAAGAACTACTGGAACACGCACATTAGGAAAAGGCTTCTCAGAATGGGAATTGATCCGGTGACTCACAATCCGCGTCTTGATCTTCTGGACATCTCCTCCATTTTAAGCTCGTCTCTTTACAACTCATCTCAAATGAACATTTCAAGTTTATTGGGAAATGTGCAACCCCTAATCAATCCCGAATTTCTACGGCTAGCAAGTTCTCTCTTATCGTCCCAACAGCGCCAAAATTCAAATTTTCTTTCACAAAATTTCCAACAAAACCACGTTTCCAATTCCCGTGTCCAAAGCCAATTGCCACAATTAGTCCAGTACCCTAGCCAATTTCAAGACTCAAATCAAGAAACACAAACTTGTTCCACATTGACTACACCTTGTGGTCAATTTCCTAGTGAAACACAACTTTTCCAACCCAATTTAGAGCAGTTCTCACCTAATTTTACAAACATTAGCTCTCAAAATTGTCAACAAAGTGATTGGCAAAACAACGGATTTCCCTATAATATTGTATCCGATGATTATGTATCTTTACAAGACTATGGCTACTGTGGGTCGTCCGACCAAAACTCGAATTTCCGGTCCAATGACAGCAACAACTTCAGTTTTCCCTCAGTTTTATCGAATTTAACAACCCCTTCGTCGAGCCCAACTCCATTGAATTCGAACTCAAATTCGACGTATATTACTGAAGATGAGAGAGAAAGCTACTGCAGCAATATGTTGAAGTACGAGATACCAGATATTTTGGATGTTAATGAATTCATGTAA

Network for GWHGAAZE004737

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	41	4.50E-06
PF00249.32	Myb_DNA-binding	45	82	1.80E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.101
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.781
	SRR3591708	Shoot apex	0.444
	SRR3591709	Stem	1.924
	SRR3591710	White floral bud	0.141
	SRR3591711	White flower	1.055
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.243
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.034
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.313
	SRR8316903	Complete white stage	0.114
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.047
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.045
	SRR8316907	Gold flowering stage	0.081
	SRR8316908	Gold flowering stage	0.817
SRP132670	SRR6706286	Control	0.044
	SRR6706287	Light intensity 50%	0.014
	SRR6706288	Light intensity 20%	0.020
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.196
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.180
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.110
	CNS0095598	Silvery flower (diploied) 1	0.299
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.127
	CNS0095601	Golden flower (diploid) 1	0.130
	CNS0095602	Golden flower (diploid) 2	0.186
	CNS0095603	Golden flower (diploid) 3	0.231
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.083
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.039
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.206
	CNS0095613	Golden flower (tetraploid) 1	0.132
	CNS0095614	Golden flower (tetraploid) 2	0.986
	CNS0095615	Golden flower (tetraploid) 3	0.060
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.087
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.060
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.100
	CRR073312	Silver flowering 1	0.143
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.930
	CRR073316	Gold flowering 2	0.050
	CRR073317	Gold flowering 3	0.103
	CRR073318	Tawny withering 1	2.306
	CRR073319	Tawny withering 2	5.288
	CRR073320	Tawny withering 3	1.675