Detail information of GWHGAAZE004739


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008224924.10PREDICTED: uncharacterized protein LOC103324621 [Prunus mume]
Swissprottr|Q9SSE9|JMJ25_ARATH8E-66Lysine-specific demethylase JMJ25
trEMBLtr|A0A068TUF1|A0A068TUF1_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313|EMBL:CDO99647.1}
TAIR10AT4G21430.14E-102Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene121449597121453805-
GWHAAZE00000001mRNA121449597121453805-
GWHAAZE00000001exon121453731121453805-
GWHAAZE00000001exon121453512121453644-
GWHAAZE00000001exon121453323121453386-
GWHAAZE00000001exon121452504121453230-
GWHAAZE00000001exon121452055121452384-
GWHAAZE00000001exon121451365121451847-
GWHAAZE00000001exon121451210121451282-
GWHAAZE00000001exon121450944121451029-
GWHAAZE00000001exon121449597121449668-
GWHAAZE00000001CDS121453731121453805-
GWHAAZE00000001CDS121453512121453644-
GWHAAZE00000001CDS121453323121453386-
GWHAAZE00000001CDS121452504121453230-
GWHAAZE00000001CDS121452055121452384-
GWHAAZE00000001CDS121451365121451847-
GWHAAZE00000001CDS121451210121451282-
GWHAAZE00000001CDS121450944121451029-
GWHAAZE00000001CDS121449597121449668-
Transcript Sequence

Network for GWHGAAZE004739

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02373.23JmjC5676565.70E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyJumonji

KEGG pathway

KO Enzyme pathway mapID
K15601KDM3 Thermogenesis map04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.134
SRR3591706second leaf6.619
SRR3591707mature leaf5.483
SRR3591708Shoot apex10.640
SRR3591709Stem6.183
SRR3591710White floral bud4.375
SRR3591711White flower5.947
SRR3591712Green floral bud6.522
SRR3591713Yellow flower2.630
SRP173429 SRR8316895Juvenile bud stage 4.875
SRR8316896Juvenile bud stage 4.964
SRR8316897Juvenile bud stage 2.785
SRR8316894Third green stage 2.512
SRR8316900Third green stage 5.117
SRR8316901Third green stage 4.339
SRR8316898Complete white stage 1.048
SRR8316899Complete white stage 4.375
SRR8316903Complete white stage 2.842
SRR8316902Silver flowering stage1.275
SRR8316904Silver flowering stage1.231
SRR8316905Silver flowering stage0.439
SRR8316906Gold flowering stage 2.336
SRR8316907Gold flowering stage 1.297
SRR8316908Gold flowering stage 2.343
SRP132670SRR6706286Control2.046
SRR6706287Light intensity 50%2.252
SRR6706288Light intensity 20%2.842
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.962
CNS0095593Slightly white alabastrum(diploid) 23.272
CNS0095594Slightly white alabastrum(diploid) 33.266
CNS0095595Whole white alabastrum(diploid) 22.226
CNS0095596Whole white alabastrum(diploid) 31.691
CNS0095597Whole white alabastrum(diploid) 41.960
CNS0095598Silvery flower (diploied) 14.142
CNS0095599Silvery flower (diploied) 23.075
CNS0095600Silvery flower (diploied) 34.017
CNS0095601Golden flower (diploid) 13.016
CNS0095602Golden flower (diploid) 23.005
CNS0095603Golden flower (diploid) 33.050
CNS0095604Slightly white alabastrum(tetraploid) 13.648
CNS0095605Slightly white alabastrum(tetraploid) 23.170
CNS0095606Slightly white alabastrum(tetraploid) 36.545
CNS0095607Whole white alabastrum(tetraploid) 12.659
CNS0095608Whole white alabastrum(tetraploid) 21.448
CNS0095609Whole white alabastrum(tetraploid) 34.618
CNS0095610Silvery flower (tetraploid) 13.685
CNS0095611Silvery flower (tetraploid) 23.558
CNS0095612Silvery flower (tetraploid) 32.011
CNS0095613Golden flower (tetraploid) 11.653
CNS0095614Golden flower (tetraploid) 23.350
CNS0095615Golden flower (tetraploid) 31.236
CRA001975CRR073297Stem 14.143
CRR073298Stem 23.502
CRR073299Stem 33.151
CRR073300Leaf 13.664
CRR073301Leaf 22.579
CRR073302Leaf 31.011
CRR073303Juvenile bud 11.090
CRR073304Juvenile bud 21.279
CRR073305Juvenile bud 31.672
CRR073306Third green 10.237
CRR073307Third green 20.097
CRR073308Third green 30.162
CRR073309Second white 10.422
CRR073310Second white 20.275
CRR073311Second white 30.286
CRR073312Silver flowering 10.219
CRR073313Silver flowering 20.011
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.041
CRR073316Gold flowering 22.159
CRR073317Gold flowering 30.747
CRR073318Tawny withering 12.518
CRR073319Tawny withering 22.084
CRR073320Tawny withering 31.515