Detail information of GWHGAAZE004752


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI40874.30unnamed protein product [Vitis vinifera]
trEMBLtr|F6I745|F6I745_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB62763.1}
TAIR10AT1G61620.13E-125phosphoinositide binding

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene121628606121633055-
GWHAAZE00000001mRNA121628606121633055-
GWHAAZE00000001exon121632826121633055-
GWHAAZE00000001exon121630846121631196-
GWHAAZE00000001exon121628606121629287-
GWHAAZE00000001five_prime_UTR121632826121633055-
GWHAAZE00000001five_prime_UTR121631085121631196-
GWHAAZE00000001CDS121630846121631084-
GWHAAZE00000001CDS121628606121629287-
Transcript Sequence

Network for GWHGAAZE004752

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15906.6zf-NOSIP5757.00E-16
PF04641.13Rtf21892708.40E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0061630molecular_functionubiquitin protein ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.636
SRR3591706second leaf19.140
SRR3591707mature leaf19.479
SRR3591708Shoot apex27.724
SRR3591709Stem38.535
SRR3591710White floral bud37.075
SRR3591711White flower46.237
SRR3591712Green floral bud30.748
SRR3591713Yellow flower35.663
SRP173429 SRR8316895Juvenile bud stage 16.192
SRR8316896Juvenile bud stage 21.080
SRR8316897Juvenile bud stage 8.325
SRR8316894Third green stage 8.178
SRR8316900Third green stage 28.342
SRR8316901Third green stage 24.567
SRR8316898Complete white stage 13.578
SRR8316899Complete white stage 40.226
SRR8316903Complete white stage 25.219
SRR8316902Silver flowering stage15.835
SRR8316904Silver flowering stage20.670
SRR8316905Silver flowering stage10.229
SRR8316906Gold flowering stage 29.219
SRR8316907Gold flowering stage 31.271
SRR8316908Gold flowering stage 31.390
SRP132670SRR6706286Control35.850
SRR6706287Light intensity 50%37.710
SRR6706288Light intensity 20%37.188
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.222
CNS0095593Slightly white alabastrum(diploid) 217.010
CNS0095594Slightly white alabastrum(diploid) 314.241
CNS0095595Whole white alabastrum(diploid) 215.854
CNS0095596Whole white alabastrum(diploid) 310.127
CNS0095597Whole white alabastrum(diploid) 414.609
CNS0095598Silvery flower (diploied) 120.286
CNS0095599Silvery flower (diploied) 221.701
CNS0095600Silvery flower (diploied) 330.744
CNS0095601Golden flower (diploid) 119.451
CNS0095602Golden flower (diploid) 229.404
CNS0095603Golden flower (diploid) 328.086
CNS0095604Slightly white alabastrum(tetraploid) 112.625
CNS0095605Slightly white alabastrum(tetraploid) 212.665
CNS0095606Slightly white alabastrum(tetraploid) 322.125
CNS0095607Whole white alabastrum(tetraploid) 110.246
CNS0095608Whole white alabastrum(tetraploid) 29.338
CNS0095609Whole white alabastrum(tetraploid) 314.616
CNS0095610Silvery flower (tetraploid) 123.231
CNS0095611Silvery flower (tetraploid) 227.079
CNS0095612Silvery flower (tetraploid) 323.867
CNS0095613Golden flower (tetraploid) 115.150
CNS0095614Golden flower (tetraploid) 222.830
CNS0095615Golden flower (tetraploid) 328.986
CRA001975CRR073297Stem 126.801
CRR073298Stem 228.026
CRR073299Stem 334.996
CRR073300Leaf 132.848
CRR073301Leaf 233.494
CRR073302Leaf 330.803
CRR073303Juvenile bud 134.849
CRR073304Juvenile bud 238.430
CRR073305Juvenile bud 353.594
CRR073306Third green 135.245
CRR073307Third green 238.096
CRR073308Third green 333.170
CRR073309Second white 127.551
CRR073310Second white 220.456
CRR073311Second white 320.265
CRR073312Silver flowering 123.934
CRR073313Silver flowering 236.335
CRR073314Silver flowering 324.812
CRR073315Gold flowering 123.378
CRR073316Gold flowering 224.497
CRR073317Gold flowering 335.421
CRR073318Tawny withering 133.283
CRR073319Tawny withering 228.743
CRR073320Tawny withering 337.660