Gene detail

Detail information of GWHGAAZE004756

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006467934.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120-like isoform X3 [Citrus sinensis]
Swissprot	tr\|Q9SY89\|Y1661_ARATH	5E-144	Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 (Precursor)
trEMBL	tr\|A0A067G7V2\|A0A067G7V2_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO75664.1} (Fragment)
TAIR10	AT1G61610.1	3E-117	S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	121675622	121678488	+
GWHAAZE00000001	mRNA	121675622	121678488	+
GWHAAZE00000001	exon	121675622	121676918	+
GWHAAZE00000001	exon	121677411	121677521	+
GWHAAZE00000001	exon	121677613	121677659	+
GWHAAZE00000001	exon	121678165	121678488	+
GWHAAZE00000001	CDS	121675622	121676918	+
GWHAAZE00000001	CDS	121677411	121677521	+
GWHAAZE00000001	CDS	121677613	121677659	+
GWHAAZE00000001	CDS	121678165	121678488	+

Transcript Sequence
>GWHTAAZE004762 ATGATGAGCATTTATTACACAAACCCAATAATTTTTTGTGTTTTATTAATTTTATTGATTTTTTGTAGATTTGCTCTGTTTTCAGAAGCAGCAAGCTCCACTATCACACAAGGAGAGCTAATAAGAGATGGCCAAACAGTAATCTCTGAAGGCCAGATCTTTGCTCTTGGGTTTTTCAGCCCTGAAAATTCAACACTAAGATATGTTGGAATTTGGTACAACGAAATTCCGGTACAAACAGTGGTATGGATTGCAAATAGAGACAATCCAATTTCTGGTAATACTGGGGTTTTAAGTATTGCAAATGATGGGAATTTAGTGGTTTTAGATGGGAATTCTAGTGTAGTTTGGTCTAGTAACACTTCATCTCCATCGACTAATTCAACTGCGATTCTTACGGATACCGGAGATCTTATTTTATTGCGTAGTGAAGATGTTAACGATATCAGTATGTTCTTGTGGAAGAGCTTTAGCTATCCCACGGATACTTATTTGCCCGACATGAGAGCCTACATGAATTCTCAAACAGGAGAGAATCGAATTTTTACTTCTTCGAGAAGTGCTACAAATCCGTCGCGTGGAAACTACTCATTGGGTCTTGATCCACGCGGTTCACCACAAATAGTGATGTGGGAGGGTTCAAATCGACGGTGGAGAAGTGGGCATTGGAATGGTCTGGTGTTTACTGGTGTTCCAAGCATGAGAGCTTTGTATTTGTATGGTTTTGCGCTCACCAACGAAGGCAATGGAGTAATGTATTTCACTTATAACACAGTGAATGAGTCTCTTCTCACGAGGTTTAGGCTAGGCTGGGATGGGATTGTAGAGCAGTTAATTTGGAATGGAAATATTAGCGAGTGGAATGTAACACTATCACAGCCCTCTAGTCAATGCGAGTTGTATAACAAGTGTGGGAATTTCGGGATTTGTAGTATGACCAATTCTCCTATATGTAGTTGTGTCGAAGGTTTTGTACCGAGGAATTTAGATCAATGGAATAGTGGGAATTGGTCTGGTGGGTGCATGAGGAGGACCCCGTTGCAGTGTGGAGGGAACGGTACAAGTGATGGGTTTTTGGAAGTGAATTGGGTGAAGTTGCCAGATTTTGCTGATCATACCTCTTTGCCTACAAACATTGATGAGTGTCAAGAAGAGTGCTTGAGAAACTGTTCTTGCAATGCTTACACGTATGTAGTTGGAATTGGATGCATGGTGTGGAGTGGTGATTTGGTTGATGTTGAGGTTTTTGACGACGGTGGGAAAGTACTCTTCGTACGACTCACTGATTCTGAATTAGGAGGTGAAAGCAGGCTATCCAAATTAGCGATTATACTGATTTCAGTATTTGGAGCAGTTTTTCTTGGCATAAGCTTATGGATCATATGGAGGTTCAGAGGAAGATTAAAAGCATTCTCAAAATCAAAGAGTCAAAACGACAAACAGCAGACATGTGATTGGCTATCTAGTGATTTAAATGGAAATCAACTTCCTTTAGTGGGAAATGGAATTTCGTTAACATACTGTGATTTACCTAATGCAGATCCGGCTATGAAAGCAGAACTAGACTGGAAAAAACGCTTCAAAATTATCGAAGGGATTGCACGAGGAATTCTATATCTTCATCGAGATTCAAGACTTAGGATAATTCACCGAGACCTAAAAGCTAGCAATATTTTGTTGGATGAAGAGATGAACCCAAAAATTTCAGATTTTGGCATGGCTAGAATATTCGGAGGGAACCAAAATGAAGCAAATACAGTCCGAGTTGTTGGCACATAG

Network for GWHGAAZE004756

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	80	186	5.80E-33
PF00954.21	S_locus_glycop	218	327	5.60E-33
PF08276.12	PAN_2	352	413	4.80E-19
PF00069.26	Pkinase	524	586	7.70E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0048544	biological_process	recognition of pollen
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.395
	SRR3591706	second leaf	8.784
	SRR3591707	mature leaf	7.291
	SRR3591708	Shoot apex	6.035
	SRR3591709	Stem	9.421
	SRR3591710	White floral bud	10.069
	SRR3591711	White flower	8.869
	SRR3591712	Green floral bud	3.512
	SRR3591713	Yellow flower	4.116
SRP173429	SRR8316895	Juvenile bud stage	4.861
	SRR8316896	Juvenile bud stage	1.477
	SRR8316897	Juvenile bud stage	1.738
	SRR8316894	Third green stage	1.633
	SRR8316900	Third green stage	2.055
	SRR8316901	Third green stage	2.582
	SRR8316898	Complete white stage	3.932
	SRR8316899	Complete white stage	10.489
	SRR8316903	Complete white stage	6.852
	SRR8316902	Silver flowering stage	2.993
	SRR8316904	Silver flowering stage	5.801
	SRR8316905	Silver flowering stage	3.150
	SRR8316906	Gold flowering stage	9.457
	SRR8316907	Gold flowering stage	6.188
	SRR8316908	Gold flowering stage	10.473
SRP132670	SRR6706286	Control	1.681
	SRR6706287	Light intensity 50%	2.189
	SRR6706288	Light intensity 20%	1.953
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.071
	CNS0095593	Slightly white alabastrum(diploid) 2	3.721
	CNS0095594	Slightly white alabastrum(diploid) 3	2.689
	CNS0095595	Whole white alabastrum(diploid) 2	4.045
	CNS0095596	Whole white alabastrum(diploid) 3	0.849
	CNS0095597	Whole white alabastrum(diploid) 4	2.840
	CNS0095598	Silvery flower (diploied) 1	10.277
	CNS0095599	Silvery flower (diploied) 2	10.958
	CNS0095600	Silvery flower (diploied) 3	7.712
	CNS0095601	Golden flower (diploid) 1	11.339
	CNS0095602	Golden flower (diploid) 2	10.315
	CNS0095603	Golden flower (diploid) 3	8.700
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.387
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.472
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.123
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.915
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.862
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.990
	CNS0095610	Silvery flower (tetraploid) 1	5.074
	CNS0095611	Silvery flower (tetraploid) 2	4.785
	CNS0095612	Silvery flower (tetraploid) 3	2.695
	CNS0095613	Golden flower (tetraploid) 1	1.753
	CNS0095614	Golden flower (tetraploid) 2	3.549
	CNS0095615	Golden flower (tetraploid) 3	1.333
CRA001975	CRR073297	Stem 1	2.511
	CRR073298	Stem 2	1.888
	CRR073299	Stem 3	1.692
	CRR073300	Leaf 1	2.363
	CRR073301	Leaf 2	1.453
	CRR073302	Leaf 3	2.067
	CRR073303	Juvenile bud 1	2.055
	CRR073304	Juvenile bud 2	2.781
	CRR073305	Juvenile bud 3	3.159
	CRR073306	Third green 1	2.782
	CRR073307	Third green 2	3.116
	CRR073308	Third green 3	2.769
	CRR073309	Second white 1	2.137
	CRR073310	Second white 2	3.458
	CRR073311	Second white 3	2.130
	CRR073312	Silver flowering 1	2.412
	CRR073313	Silver flowering 2	1.237
	CRR073314	Silver flowering 3	1.883
	CRR073315	Gold flowering 1	1.049
	CRR073316	Gold flowering 2	3.874
	CRR073317	Gold flowering 3	5.009
	CRR073318	Tawny withering 1	5.098
	CRR073319	Tawny withering 2	12.889
	CRR073320	Tawny withering 3	3.870