Gene detail

Detail information of GWHGAAZE004761

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010052432.1	4.0275E-151	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Eucalyptus grandis]
Swissprot	tr\|O81832\|Y4729_ARATH	1E-129	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|A0A061GG05\|A0A061GG05_THECC	5E-158	Receptor kinase 3 isoform 2 {ECO:0000313\|EMBL:EOY28496.1} (Fragment)
TAIR10	AT4G27290.1	5E-112	S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	121760245	121764408	+
GWHAAZE00000001	mRNA	121760245	121764408	+
GWHAAZE00000001	exon	121760245	121761143	+
GWHAAZE00000001	exon	121761233	121761531	+
GWHAAZE00000001	exon	121762034	121762130	+
GWHAAZE00000001	exon	121762217	121762260	+
GWHAAZE00000001	exon	121762392	121762535	+
GWHAAZE00000001	exon	121763024	121763261	+
GWHAAZE00000001	exon	121764213	121764408	+
GWHAAZE00000001	CDS	121760245	121761143	+
GWHAAZE00000001	CDS	121761233	121761531	+
GWHAAZE00000001	CDS	121762034	121762130	+
GWHAAZE00000001	CDS	121762217	121762260	+
GWHAAZE00000001	CDS	121762392	121762535	+
GWHAAZE00000001	CDS	121763024	121763261	+
GWHAAZE00000001	CDS	121764213	121764408	+

Transcript Sequence
>GWHTAAZE004767 ATGGCAAGGAAAGTTTTCTTAGCTTCCAAAACATGGGCCTTTCTTCCCCTTCAAACTCTCTCTTACCTATTCGTACTTCTACCTTCATATACCTCCATTGCCACCAACACCTTAAGCCCTACTCAAAACCTCACAGATGGTAGCACTTTAATCTCCTCCAATCAACGATTTGAATTAGGTTTCTTTACTCCTGGAAATTCAACTAATCGTTATTTGGGCATATGGTACCACAATCTCCCTCTCACTGTAGTTTGGGTAGCCAACAGACAAAACCCAATTGCCGATTTTTCCGGCGAATTAACCCTCAACAACAATGGTGCCTTACTTCTGTATGACCGATCAATGGCGGTTATCTGGTACACTAATCTAACAGACAAAGTCAATAACCCAGTTCTGCAATTGTTAAACTCAGGTAATCTTGTGGTTAAAAATGACGGGGATGATGATGATTTTGTTTGGGAAAGTTTTGATTACTTATCTGATACTTTATTGCCTGGTATGAAGTTAGGATGGAAGTTAAAATTAGGGTTTAATAGGAATTTGACTTTGAAAAGTAATGAGGACCCATCAAATGGTGAGTTCAGCTTTAGTTTGGACCCACCGGAATCGCCTCAGTTAACACTTAGGAGATTATCGGAGAAATTGTATAGGTGGGGTCCTTTTGATGGGGATAGATTCAGTGGTAGCAATGAGTTAAGGCCAAATTCTGTTTTTGAGCCCCTGTTTATATATAATTCGGATGAGGTTTATTATAGGTATAATTTGCTAGATGACTCTGTTCTATCTCGCTTTGTCGTGAATCCAATGGGTTCAATTCAGTATTTCACATGGAGCGATCATAGGAAAGAATGGGCTATGATGGTGACACACTTAATCGAATTTGACGATACGGTTGTTATGATATTTGATTCAAAGGGTGGTTGTAAGAGGAATCATGAGTTGAATTGTAGTAACGGGGATGGGTTTGTGAAGTATGTTGGCTTGAAGTTGCCGGATAATGCAACTGTGTGGCCAAATTACAGTAATGAGGAGTGTAGAATGGAGTGTTTGAAAAATTGTGGGTGTATGGCTCATGCAAGCGTTAATGTGCATGCTAATGGCAGTCAATGTGTAGTCTGGCTTGATGATTTGATTGATATTCGATATATTCGAAATGGTGGGGAGGATCTTTACATACGAATGGCACGCGCTGAATTAGAGTCTATTGCCACTGCTAAGAGGAGAAAACAAGTGGTGAAAATCAGTATCATTGTCATATCATCGATTTTTGGGATGCTTCTCACTAGTTTTGTCTGTTCTCATTCCTTATCTGTTATTTTTGCTGTGAAGTTCGCAAGTGGTAAACAGGAAAATAATTCCTACAAATATTCTAAGCAAGAAAGTCAACAAGACAACTCAGAATTACCTCTCTTTGACCTGGATACAATTCTTACCGCTACTGGCAAATTTTGCTCACAAAATAGGATTGGACAAGGCGGTTTTGATCTATCTAAAAGAAAGCTGCTGCATTGGAAGAAGCGCTTCGAGATTATTACTGGGATTGCCCGAGGGTTGCTTTATCTTCATCAAGACTCCATAGTGAAAATCATCCATAGGGATCTTAAAACTAGTAACATCTTACTAGACAGTGAGATGAACCCAAAGATTTCAGATTTTGGAATAGCAAGAATCTTTGGAGGAGATCAGACAGAAGAAAAGACCAAGAGAGTAATCGGAACATACAACGCCAGAACAGACGGCCCAACAATGAGTTCGGTAGTTTTCATGCTGGGTAATGAAAACTTGGTGTTGGCTCATCCGAAGGAACCTGGTTTTGCTATAGAAAGTTCTTCGAAGAAGTTTGATTCATCGATGAGTGGGCAACATTCTAGTAGTACTGCTAATGAAATAACCATCACTACCATGGACGGTCGTTAG

Network for GWHGAAZE004761

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	82	182	4.50E-32
PF00954.21	S_locus_glycop	216	324	3.60E-13
PF08276.12	PAN_2	316	380	9.70E-16
PF00069.26	Pkinase	499	573	2.10E-14
PF11883.9	DUF3403	592	638	9.60E-10

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0048544	biological_process	recognition of pollen
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.342
	SRR3591706	second leaf	2.861
	SRR3591707	mature leaf	2.297
	SRR3591708	Shoot apex	5.796
	SRR3591709	Stem	5.572
	SRR3591710	White floral bud	3.465
	SRR3591711	White flower	4.531
	SRR3591712	Green floral bud	6.234
	SRR3591713	Yellow flower	3.576
SRP173429	SRR8316895	Juvenile bud stage	5.740
	SRR8316896	Juvenile bud stage	5.271
	SRR8316897	Juvenile bud stage	4.558
	SRR8316894	Third green stage	1.426
	SRR8316900	Third green stage	3.760
	SRR8316901	Third green stage	3.396
	SRR8316898	Complete white stage	0.930
	SRR8316899	Complete white stage	6.562
	SRR8316903	Complete white stage	2.365
	SRR8316902	Silver flowering stage	0.931
	SRR8316904	Silver flowering stage	1.610
	SRR8316905	Silver flowering stage	0.688
	SRR8316906	Gold flowering stage	2.740
	SRR8316907	Gold flowering stage	1.856
	SRR8316908	Gold flowering stage	2.860
SRP132670	SRR6706286	Control	0.984
	SRR6706287	Light intensity 50%	1.184
	SRR6706288	Light intensity 20%	1.474
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.394
	CNS0095593	Slightly white alabastrum(diploid) 2	2.982
	CNS0095594	Slightly white alabastrum(diploid) 3	3.156
	CNS0095595	Whole white alabastrum(diploid) 2	2.352
	CNS0095596	Whole white alabastrum(diploid) 3	1.048
	CNS0095597	Whole white alabastrum(diploid) 4	2.393
	CNS0095598	Silvery flower (diploied) 1	4.524
	CNS0095599	Silvery flower (diploied) 2	4.585
	CNS0095600	Silvery flower (diploied) 3	2.642
	CNS0095601	Golden flower (diploid) 1	5.291
	CNS0095602	Golden flower (diploid) 2	4.287
	CNS0095603	Golden flower (diploid) 3	3.528
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.311
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.535
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.822
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.415
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.589
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.132
	CNS0095610	Silvery flower (tetraploid) 1	2.396
	CNS0095611	Silvery flower (tetraploid) 2	2.184
	CNS0095612	Silvery flower (tetraploid) 3	1.311
	CNS0095613	Golden flower (tetraploid) 1	0.854
	CNS0095614	Golden flower (tetraploid) 2	1.885
	CNS0095615	Golden flower (tetraploid) 3	0.596
CRA001975	CRR073297	Stem 1	1.729
	CRR073298	Stem 2	1.773
	CRR073299	Stem 3	1.074
	CRR073300	Leaf 1	1.189
	CRR073301	Leaf 2	1.353
	CRR073302	Leaf 3	0.612
	CRR073303	Juvenile bud 1	0.401
	CRR073304	Juvenile bud 2	0.237
	CRR073305	Juvenile bud 3	0.666
	CRR073306	Third green 1	0.136
	CRR073307	Third green 2	0.104
	CRR073308	Third green 3	0.138
	CRR073309	Second white 1	0.210
	CRR073310	Second white 2	0.099
	CRR073311	Second white 3	0.148
	CRR073312	Silver flowering 1	0.228
	CRR073313	Silver flowering 2	0.025
	CRR073314	Silver flowering 3	0.074
	CRR073315	Gold flowering 1	0.517
	CRR073316	Gold flowering 2	2.147
	CRR073317	Gold flowering 3	0.570
	CRR073318	Tawny withering 1	1.572
	CRR073319	Tawny withering 2	2.006
	CRR073320	Tawny withering 3	0.654