Detail information of GWHGAAZE004770


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010646919.16.053E-171PREDICTED: (3S,6E)-nerolidol synthase 1, chloroplastic-like isoform X1 [Vitis vinifera]
Swissprottr|P0CV94|NES1_FRAAN8E-163(3S,6E)-nerolidol synthase 1
trEMBLtr|A5BI81|A5BI81_VITVI5E-171Putative uncharacterized protein {ECO:0000313|EMBL:CAN83267.1}
TAIR10AT1G61680.21E-106terpene synthase 14

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene121996220121998440-
GWHAAZE00000001mRNA121996220121998440-
GWHAAZE00000001exon121996220121996492-
GWHAAZE00000001exon121996603121996851-
GWHAAZE00000001exon121996949121997087-
GWHAAZE00000001exon121997282121997500-
GWHAAZE00000001exon121997609121997675-
GWHAAZE00000001exon121998009121998261-
GWHAAZE00000001exon121998336121998440-
GWHAAZE00000001CDS121998336121998440-
GWHAAZE00000001CDS121998009121998261-
GWHAAZE00000001CDS121997609121997675-
GWHAAZE00000001CDS121997282121997500-
GWHAAZE00000001CDS121996949121997087-
GWHAAZE00000001CDS121996603121996851-
GWHAAZE00000001CDS121996220121996492-
Transcript Sequence

Network for GWHGAAZE004770

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01397.22Terpene_synth341199.40E-15
PF03936.17Terpene_synth_C1203847.90E-95
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14175NES1 Metabolic pathways map01100
Sesquiterpenoid and triterpenoid biosynthesismap00909

Gene Ontology

GO term OntologyName
GO:0010333molecular_functionterpene synthase activity
GO:0016829molecular_functionlyase activity
GO:0000287molecular_functionmagnesium ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf34.403
SRR3591706second leaf48.479
SRR3591707mature leaf140.940
SRR3591708Shoot apex43.304
SRR3591709Stem34.767
SRR3591710White floral bud18.165
SRR3591711White flower69.391
SRR3591712Green floral bud8.626
SRR3591713Yellow flower29.041
SRP173429 SRR8316895Juvenile bud stage 36.488
SRR8316896Juvenile bud stage 15.276
SRR8316897Juvenile bud stage 16.623
SRR8316894Third green stage 5.268
SRR8316900Third green stage 6.924
SRR8316901Third green stage 8.110
SRR8316898Complete white stage 4.649
SRR8316899Complete white stage 63.759
SRR8316903Complete white stage 23.786
SRR8316902Silver flowering stage10.688
SRR8316904Silver flowering stage15.369
SRR8316905Silver flowering stage4.243
SRR8316906Gold flowering stage 23.492
SRR8316907Gold flowering stage 32.282
SRR8316908Gold flowering stage 9.548
SRP132670SRR6706286Control5.005
SRR6706287Light intensity 50%8.984
SRR6706288Light intensity 20%7.284
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.051
CNS0095593Slightly white alabastrum(diploid) 222.605
CNS0095594Slightly white alabastrum(diploid) 319.790
CNS0095595Whole white alabastrum(diploid) 213.796
CNS0095596Whole white alabastrum(diploid) 32.133
CNS0095597Whole white alabastrum(diploid) 416.818
CNS0095598Silvery flower (diploied) 1151.784
CNS0095599Silvery flower (diploied) 2132.802
CNS0095600Silvery flower (diploied) 337.405
CNS0095601Golden flower (diploid) 1115.323
CNS0095602Golden flower (diploid) 293.282
CNS0095603Golden flower (diploid) 395.743
CNS0095604Slightly white alabastrum(tetraploid) 15.632
CNS0095605Slightly white alabastrum(tetraploid) 21.270
CNS0095606Slightly white alabastrum(tetraploid) 324.932
CNS0095607Whole white alabastrum(tetraploid) 13.690
CNS0095608Whole white alabastrum(tetraploid) 20.318
CNS0095609Whole white alabastrum(tetraploid) 31.968
CNS0095610Silvery flower (tetraploid) 15.610
CNS0095611Silvery flower (tetraploid) 211.650
CNS0095612Silvery flower (tetraploid) 35.552
CNS0095613Golden flower (tetraploid) 10.805
CNS0095614Golden flower (tetraploid) 23.482
CNS0095615Golden flower (tetraploid) 30.522
CRA001975CRR073297Stem 116.611
CRR073298Stem 218.809
CRR073299Stem 321.127
CRR073300Leaf 18.246
CRR073301Leaf 25.975
CRR073302Leaf 311.683
CRR073303Juvenile bud 16.569
CRR073304Juvenile bud 23.959
CRR073305Juvenile bud 315.327
CRR073306Third green 136.022
CRR073307Third green 226.925
CRR073308Third green 331.463
CRR073309Second white 1112.374
CRR073310Second white 2130.166
CRR073311Second white 3167.537
CRR073312Silver flowering 1119.822
CRR073313Silver flowering 284.775
CRR073314Silver flowering 381.832
CRR073315Gold flowering 133.325
CRR073316Gold flowering 2108.089
CRR073317Gold flowering 359.534
CRR073318Tawny withering 115.517
CRR073319Tawny withering 2177.278
CRR073320Tawny withering 311.094