Detail information of GWHGAAZE004771


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAEY82696.10(3S)-linalool/(E)-nerolidol synthase [Vitis vinifera]
Swissprottr|P0CV96|NES1_FRAVE0(3S,6E)-nerolidol synthase 1, chloroplastic (Precursor)
trEMBLtr|H6WBC5|H6WBC5_VITVI0(3S)-linalool/(E)-nerolidol synthase {ECO:0000313|EMBL:AEY82696.1}
TAIR10AT1G61680.14E-129terpene synthase 14

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene122013141122015701-
GWHAAZE00000001mRNA122013141122015701-
GWHAAZE00000001exon122013141122013419-
GWHAAZE00000001exon122013521122013769-
GWHAAZE00000001exon122013863122014001-
GWHAAZE00000001exon122014213122014431-
GWHAAZE00000001exon122014982122015357-
GWHAAZE00000001exon122015458122015701-
GWHAAZE00000001CDS122015458122015701-
GWHAAZE00000001CDS122014982122015357-
GWHAAZE00000001CDS122014213122014431-
GWHAAZE00000001CDS122013863122014001-
GWHAAZE00000001CDS122013521122013769-
GWHAAZE00000001CDS122013141122013419-
Transcript Sequence

Network for GWHGAAZE004771

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01397.22Terpene_synth141402.50E-41
PF03936.17Terpene_synth_C1854491.90E-90
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14175NES1 Metabolic pathways map01100
Sesquiterpenoid and triterpenoid biosynthesismap00909

Gene Ontology

GO term OntologyName
GO:0000287molecular_functionmagnesium ion binding
GO:0010333molecular_functionterpene synthase activity
GO:0016829molecular_functionlyase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.349
SRR3591706second leaf2.080
SRR3591707mature leaf3.208
SRR3591708Shoot apex1.718
SRR3591709Stem0.170
SRR3591710White floral bud1.147
SRR3591711White flower0.066
SRR3591712Green floral bud0.227
SRR3591713Yellow flower0.052
SRP173429 SRR8316895Juvenile bud stage 0.505
SRR8316896Juvenile bud stage 0.218
SRR8316897Juvenile bud stage 0.170
SRR8316894Third green stage 0.162
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.149
SRR8316898Complete white stage 1.223
SRR8316899Complete white stage 1.805
SRR8316903Complete white stage 2.332
SRR8316902Silver flowering stage0.005
SRR8316904Silver flowering stage0.046
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.347
SRR8316908Gold flowering stage 0.069
SRP132670SRR6706286Control0.032
SRR6706287Light intensity 50%0.036
SRR6706288Light intensity 20%0.079
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.711
CNS0095593Slightly white alabastrum(diploid) 21.559
CNS0095594Slightly white alabastrum(diploid) 35.341
CNS0095595Whole white alabastrum(diploid) 22.120
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 44.688
CNS0095598Silvery flower (diploied) 13.222
CNS0095599Silvery flower (diploied) 24.275
CNS0095600Silvery flower (diploied) 30.496
CNS0095601Golden flower (diploid) 11.159
CNS0095602Golden flower (diploid) 20.776
CNS0095603Golden flower (diploid) 30.772
CNS0095604Slightly white alabastrum(tetraploid) 10.112
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.164
CNS0095607Whole white alabastrum(tetraploid) 10.250
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.213
CNS0095611Silvery flower (tetraploid) 20.046
CNS0095612Silvery flower (tetraploid) 30.114
CNS0095613Golden flower (tetraploid) 10.077
CNS0095614Golden flower (tetraploid) 20.351
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.293
CRR073298Stem 20.173
CRR073299Stem 30.000
CRR073300Leaf 10.000
CRR073301Leaf 20.000
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.056
CRR073307Third green 20.127
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.006
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.411
CRR073316Gold flowering 21.385
CRR073317Gold flowering 30.512
CRR073318Tawny withering 10.076
CRR073319Tawny withering 25.382
CRR073320Tawny withering 30.055