Detail information of GWHGAAZE004783


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010647408.13.73514E-75PREDICTED: putative F-box protein At3g52320 [Vitis vinifera]
Swissprottr|Q9SI34|FBX9_ARATH0.000002Putative F-box only protein 9
trEMBLtr|B9SFD4|B9SFD4_RICCO4E-40Putative uncharacterized protein {ECO:0000313|EMBL:EEF37722.1}
TAIR10AT3G04660.10.00000001F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene122231536122232588+
GWHAAZE00000001mRNA122231536122232588+
GWHAAZE00000001exon122231536122232588+
GWHAAZE00000001CDS122231536122232588+
Transcript Sequence

Network for GWHGAAZE004783

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box12505.30E-07
PF08268.13FBA_32002911.00E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.787
SRR3591706second leaf0.088
SRR3591707mature leaf0.238
SRR3591708Shoot apex0.357
SRR3591709Stem0.920
SRR3591710White floral bud7.083
SRR3591711White flower4.622
SRR3591712Green floral bud2.008
SRR3591713Yellow flower0.573
SRP173429 SRR8316895Juvenile bud stage 1.165
SRR8316896Juvenile bud stage 0.990
SRR8316897Juvenile bud stage 0.653
SRR8316894Third green stage 0.423
SRR8316900Third green stage 0.838
SRR8316901Third green stage 0.882
SRR8316898Complete white stage 1.693
SRR8316899Complete white stage 5.291
SRR8316903Complete white stage 2.848
SRR8316902Silver flowering stage0.282
SRR8316904Silver flowering stage0.279
SRR8316905Silver flowering stage0.481
SRR8316906Gold flowering stage 0.504
SRR8316907Gold flowering stage 0.134
SRR8316908Gold flowering stage 0.482
SRP132670SRR6706286Control0.327
SRR6706287Light intensity 50%0.589
SRR6706288Light intensity 20%0.555
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.213
CNS0095593Slightly white alabastrum(diploid) 20.612
CNS0095594Slightly white alabastrum(diploid) 31.161
CNS0095595Whole white alabastrum(diploid) 20.855
CNS0095596Whole white alabastrum(diploid) 30.440
CNS0095597Whole white alabastrum(diploid) 42.262
CNS0095598Silvery flower (diploied) 12.830
CNS0095599Silvery flower (diploied) 21.195
CNS0095600Silvery flower (diploied) 33.135
CNS0095601Golden flower (diploid) 13.164
CNS0095602Golden flower (diploid) 23.940
CNS0095603Golden flower (diploid) 34.021
CNS0095604Slightly white alabastrum(tetraploid) 13.613
CNS0095605Slightly white alabastrum(tetraploid) 22.688
CNS0095606Slightly white alabastrum(tetraploid) 33.847
CNS0095607Whole white alabastrum(tetraploid) 13.093
CNS0095608Whole white alabastrum(tetraploid) 21.374
CNS0095609Whole white alabastrum(tetraploid) 31.463
CNS0095610Silvery flower (tetraploid) 15.648
CNS0095611Silvery flower (tetraploid) 210.664
CNS0095612Silvery flower (tetraploid) 32.024
CNS0095613Golden flower (tetraploid) 12.538
CNS0095614Golden flower (tetraploid) 23.948
CNS0095615Golden flower (tetraploid) 30.899
CRA001975CRR073297Stem 10.241
CRR073298Stem 20.452
CRR073299Stem 30.203
CRR073300Leaf 10.482
CRR073301Leaf 20.305
CRR073302Leaf 30.117
CRR073303Juvenile bud 10.218
CRR073304Juvenile bud 21.437
CRR073305Juvenile bud 31.045
CRR073306Third green 10.123
CRR073307Third green 20.000
CRR073308Third green 30.002
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.090
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.024
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.299
CRR073319Tawny withering 20.042
CRR073320Tawny withering 30.010