Gene detail

Detail information of GWHGAAZE004798

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010240920.1	2.60447E-77	PREDICTED: protein translation factor SUI1 homolog [Nelumbo nucifera]
Swissprot	tr\|Q0D5W6\|SUI1_ORYSJ	4E-74	Protein translation factor SUI1 homolog
trEMBL	tr\|V7AH46\|V7AH46_PHAVU	3E-75	Uncharacterized protein {ECO:0000313\|EMBL:ESW04947.1}
TAIR10	AT4G27130.1	5E-57	Translation initiation factor SUI1 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	122531475	122532955	+
GWHAAZE00000001	mRNA	122531475	122532955	+
GWHAAZE00000001	exon	122531475	122531511	+
GWHAAZE00000001	exon	122532072	122532277	+
GWHAAZE00000001	exon	122532462	122532515	+
GWHAAZE00000001	exon	122532612	122532955	+
GWHAAZE00000001	CDS	122531475	122531511	+
GWHAAZE00000001	CDS	122532072	122532277	+
GWHAAZE00000001	CDS	122532462	122532515	+
GWHAAZE00000001	CDS	122532612	122532656	+
GWHAAZE00000001	three_prime_UTR	122532657	122532955	+

Transcript Sequence
>GWHTAAZE004804 ATGTCTGAGCTCGACATCCAGATTCCCACAACCTTTGATCCATTCGCTGAGGCAAATGCTGAGGACTCAGGTGCGGGGTCAAAAGAATATGTGCATATCCGTATACAGCAGCGAAATGGTAGGAAAAGCCTGACAACTGTCCAAGGGTTGAAGAAAGAGTTCAGTTACAACAAGATACTCAAGGACCTCAAGAAGGAGTTTTGCTGCAATGGTACTGTTGTTCAAGACCCTGAGCTGGGCCAGGTTATCCAACTTCAAGGTGATCAGCGAAAAAATGTTTCGACCTTCCTTGTTCAGGCTGGCATTGTGAAGAAGGAACATATTAAGATACATGGTTTTTGAACAGCAGGGGGTGGCAGTATATTGATCTCCCTCTGGTTGCAATTGCGGCTGTATGTAAGCAATATAATATTTATATGGGCTTCTGGATATAGCTTTGTTTGCACACAATTTCGATCTATGTTGAACTGTTACTTCTCTGTCGCTGTTGACGTCATTCGTGTTTATGCATAAATATTTGAATTTATTGCCAACATATGTGTGGTCTAGGTTATATTGTTACTTGTACAATTTGTGAGGGTCTGTGAACTAATTCTCTCCTTCATGTTCGTTCTGAACTTTTTTAGTTGGAACGAGGAGTA

Network for GWHGAAZE004798

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01253.23	SUI1	28	102	1.50E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03113	EIF1, SUI1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006413	biological_process	translational initiation
GO:0003743	molecular_function	translation initiation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	109.592
	SRR3591706	second leaf	62.253
	SRR3591707	mature leaf	98.760
	SRR3591708	Shoot apex	80.681
	SRR3591709	Stem	168.531
	SRR3591710	White floral bud	204.573
	SRR3591711	White flower	214.328
	SRR3591712	Green floral bud	112.448
	SRR3591713	Yellow flower	215.069
SRP173429	SRR8316895	Juvenile bud stage	45.632
	SRR8316896	Juvenile bud stage	74.554
	SRR8316897	Juvenile bud stage	34.856
	SRR8316894	Third green stage	29.220
	SRR8316900	Third green stage	102.965
	SRR8316901	Third green stage	109.543
	SRR8316898	Complete white stage	83.355
	SRR8316899	Complete white stage	149.334
	SRR8316903	Complete white stage	122.769
	SRR8316902	Silver flowering stage	95.565
	SRR8316904	Silver flowering stage	102.388
	SRR8316905	Silver flowering stage	49.640
	SRR8316906	Gold flowering stage	168.154
	SRR8316907	Gold flowering stage	162.754
	SRR8316908	Gold flowering stage	184.544
SRP132670	SRR6706286	Control	59.274
	SRR6706287	Light intensity 50%	59.777
	SRR6706288	Light intensity 20%	63.335
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	95.878
	CNS0095593	Slightly white alabastrum(diploid) 2	94.579
	CNS0095594	Slightly white alabastrum(diploid) 3	99.184
	CNS0095595	Whole white alabastrum(diploid) 2	99.945
	CNS0095596	Whole white alabastrum(diploid) 3	97.176
	CNS0095597	Whole white alabastrum(diploid) 4	98.153
	CNS0095598	Silvery flower (diploied) 1	109.040
	CNS0095599	Silvery flower (diploied) 2	119.249
	CNS0095600	Silvery flower (diploied) 3	191.177
	CNS0095601	Golden flower (diploid) 1	118.012
	CNS0095602	Golden flower (diploid) 2	167.013
	CNS0095603	Golden flower (diploid) 3	159.190
	CNS0095604	Slightly white alabastrum(tetraploid) 1	94.600
	CNS0095605	Slightly white alabastrum(tetraploid) 2	95.097
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.792
	CNS0095607	Whole white alabastrum(tetraploid) 1	89.690
	CNS0095608	Whole white alabastrum(tetraploid) 2	94.617
	CNS0095609	Whole white alabastrum(tetraploid) 3	89.511
	CNS0095610	Silvery flower (tetraploid) 1	155.365
	CNS0095611	Silvery flower (tetraploid) 2	140.582
	CNS0095612	Silvery flower (tetraploid) 3	157.220
	CNS0095613	Golden flower (tetraploid) 1	168.937
	CNS0095614	Golden flower (tetraploid) 2	145.321
	CNS0095615	Golden flower (tetraploid) 3	223.594
CRA001975	CRR073297	Stem 1	39.276
	CRR073298	Stem 2	38.353
	CRR073299	Stem 3	40.716
	CRR073300	Leaf 1	48.809
	CRR073301	Leaf 2	58.422
	CRR073302	Leaf 3	51.744
	CRR073303	Juvenile bud 1	59.880
	CRR073304	Juvenile bud 2	58.010
	CRR073305	Juvenile bud 3	57.282
	CRR073306	Third green 1	106.001
	CRR073307	Third green 2	108.134
	CRR073308	Third green 3	93.909
	CRR073309	Second white 1	112.937
	CRR073310	Second white 2	87.992
	CRR073311	Second white 3	77.635
	CRR073312	Silver flowering 1	106.108
	CRR073313	Silver flowering 2	133.631
	CRR073314	Silver flowering 3	90.915
	CRR073315	Gold flowering 1	49.767
	CRR073316	Gold flowering 2	58.669
	CRR073317	Gold flowering 3	62.768
	CRR073318	Tawny withering 1	69.858
	CRR073319	Tawny withering 2	88.370
	CRR073320	Tawny withering 3	60.248