Gene detail

Detail information of GWHGAAZE004803

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99712.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|F6H7K5\|THI42_VITVI	0	Thiamine thiazole synthase 2, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03158} (Precursor)
trEMBL	tr\|A0A068TUN2\|A0A068TUN2_COFCA	0	Thiamine thiazole synthase, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_03158}
TAIR10	AT5G54770.1	6E-154	thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	122588518	122590397	+
GWHAAZE00000001	mRNA	122588518	122590397	+
GWHAAZE00000001	exon	122588518	122588976	+
GWHAAZE00000001	exon	122589391	122589819	+
GWHAAZE00000001	exon	122590230	122590397	+
GWHAAZE00000001	CDS	122588518	122588976	+
GWHAAZE00000001	CDS	122589391	122589819	+
GWHAAZE00000001	CDS	122590230	122590397	+

Transcript Sequence
>GWHTAAZE004809 ATGGCAACCATAGCAACATCCCTCACCTCATCTTTCTTCGAACACAAATCCTCCTTCAATGGCTCCCAAATATCCTCCTCCCGCCACCAGCAACCCATCAAATCCGCCCCACAAAACCTCTCCATCACCATGTCCTCATCCACCGCATCCTATGATCTCAACTCCTTCAATTTCCAGCCAATCAAAGAATCCATTGTTTCTCGTGAAATGACCCGCAGGTACATGATGGACATGATCACCTACGCCGACACTGACGTCGTGGTTGTCGGGGCAGGATCTGCTGGACTCTCATGCGCCTACGAGCTCAGCAAGAACCCTGCAATCAACATCGCTATCATCGAACAGTCTGTCAGCCCCGGAGGCGGCGCCTGGCTCGGTGGCCAGCTCTTCTCCGCCATGGTGGTCCGGAAACCCGCGCACAAGTTCCTGGATGAGCTCGAGATTGAGTACGACGAACAGGAAGACTACGTGGTCATCAAACACGCAGCCCTGTTCACATCAACGATAATGAGCAAGCTCTTGGCTAGGCCAAACGTGAAGTTATTTAATGCTGTGGCTGCCGAGGATTTGATAGTGAAGGGTGGGAGAGTGGCTGGAGTAGTGACCAACTGGGCACTGGTGTCGATGAACCACGATACACAGTCATGTATGGATCCAAATGTGATGGAGGCTAAGATTGTTGTGAGCTCTTGTGGGCACGATGGTCCCTTTGGGGCGACTGGAGTTAAGAGGTTGAAGAGTATTGGAATGATTGATAGCGTGCCTGGGATGAAGGCATTGGACATGAACATGGCCGAGGATGCCATTGTTAGGCACACGAGAGAGGTTGTACCTGGTATGATTGTTACTGGCATGGAAGTTGCTGAGATTGATGGTGCACCCAGAATGGGTCCAACATTTGGGGCGATGATGATATCGGGGCAAAAGGCTGCACACTTGGCGTTGAGGGCACTTGGCCTTCCCAATGCTTTGGACAACACTGAATTGGGAAGCGAGGTTCAACCGGAGCTCATCCTTGCCTCTGCCGAAAGTGGAGAGATTGTTGTTGATGCTTGA

Network for GWHGAAZE004803

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01946.18	Thi4	67	300	1.10E-113

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03146	THI4, THI1	Metabolic pathways	map01100
K03146	THI4, THI1	Thiamine metabolism	map00730

Gene Ontology

GO term	Ontology	Name
GO:0009228	biological_process	thiamine biosynthetic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	204.598
	SRR3591706	second leaf	1535.140
	SRR3591707	mature leaf	1767.573
	SRR3591708	Shoot apex	295.580
	SRR3591709	Stem	184.603
	SRR3591710	White floral bud	58.074
	SRR3591711	White flower	76.410
	SRR3591712	Green floral bud	59.007
	SRR3591713	Yellow flower	6.369
SRP173429	SRR8316895	Juvenile bud stage	143.272
	SRR8316896	Juvenile bud stage	143.441
	SRR8316897	Juvenile bud stage	96.620
	SRR8316894	Third green stage	54.537
	SRR8316900	Third green stage	125.047
	SRR8316901	Third green stage	110.644
	SRR8316898	Complete white stage	11.659
	SRR8316899	Complete white stage	67.442
	SRR8316903	Complete white stage	38.411
	SRR8316902	Silver flowering stage	6.404
	SRR8316904	Silver flowering stage	7.462
	SRR8316905	Silver flowering stage	1.059
	SRR8316906	Gold flowering stage	4.676
	SRR8316907	Gold flowering stage	9.325
	SRR8316908	Gold flowering stage	12.410
SRP132670	SRR6706286	Control	162.167
	SRR6706287	Light intensity 50%	143.347
	SRR6706288	Light intensity 20%	139.308
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	101.513
	CNS0095593	Slightly white alabastrum(diploid) 2	96.011
	CNS0095594	Slightly white alabastrum(diploid) 3	93.900
	CNS0095595	Whole white alabastrum(diploid) 2	95.012
	CNS0095596	Whole white alabastrum(diploid) 3	74.238
	CNS0095597	Whole white alabastrum(diploid) 4	59.178
	CNS0095598	Silvery flower (diploied) 1	197.566
	CNS0095599	Silvery flower (diploied) 2	228.613
	CNS0095600	Silvery flower (diploied) 3	57.028
	CNS0095601	Golden flower (diploid) 1	166.533
	CNS0095602	Golden flower (diploid) 2	104.493
	CNS0095603	Golden flower (diploid) 3	104.873
	CNS0095604	Slightly white alabastrum(tetraploid) 1	100.548
	CNS0095605	Slightly white alabastrum(tetraploid) 2	99.288
	CNS0095606	Slightly white alabastrum(tetraploid) 3	156.443
	CNS0095607	Whole white alabastrum(tetraploid) 1	61.612
	CNS0095608	Whole white alabastrum(tetraploid) 2	47.534
	CNS0095609	Whole white alabastrum(tetraploid) 3	97.836
	CNS0095610	Silvery flower (tetraploid) 1	36.087
	CNS0095611	Silvery flower (tetraploid) 2	49.665
	CNS0095612	Silvery flower (tetraploid) 3	19.497
	CNS0095613	Golden flower (tetraploid) 1	9.682
	CNS0095614	Golden flower (tetraploid) 2	34.262
	CNS0095615	Golden flower (tetraploid) 3	5.879
CRA001975	CRR073297	Stem 1	356.539
	CRR073298	Stem 2	339.365
	CRR073299	Stem 3	461.079
	CRR073300	Leaf 1	131.517
	CRR073301	Leaf 2	172.949
	CRR073302	Leaf 3	136.595
	CRR073303	Juvenile bud 1	116.647
	CRR073304	Juvenile bud 2	60.148
	CRR073305	Juvenile bud 3	145.604
	CRR073306	Third green 1	2.820
	CRR073307	Third green 2	2.447
	CRR073308	Third green 3	14.760
	CRR073309	Second white 1	4.427
	CRR073310	Second white 2	5.648
	CRR073311	Second white 3	1.401
	CRR073312	Silver flowering 1	1.581
	CRR073313	Silver flowering 2	4.368
	CRR073314	Silver flowering 3	4.033
	CRR073315	Gold flowering 1	3186.806
	CRR073316	Gold flowering 2	3566.515
	CRR073317	Gold flowering 3	2572.013
	CRR073318	Tawny withering 1	285.261
	CRR073319	Tawny withering 2	261.158
	CRR073320	Tawny withering 3	237.085