Gene detail

Detail information of GWHGAAZE004806

Functional Annotation

Database	Orthologs	Annotation
Nr	CDO99721.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q93V99\|PDF2_ARATH	Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
trEMBL	tr\|A0A068TU25\|A0A068TU25_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDO99721.1}
TAIR10	AT4G04890.1	protodermal factor 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	122638366	122643104	+
GWHAAZE00000001	mRNA	122638366	122643104	+
GWHAAZE00000001	exon	122638366	122638586	+
GWHAAZE00000001	exon	122638698	122638815	+
GWHAAZE00000001	exon	122639049	122639237	+
GWHAAZE00000001	exon	122639426	122639866	+
GWHAAZE00000001	exon	122639951	122640052	+
GWHAAZE00000001	exon	122640159	122640359	+
GWHAAZE00000001	exon	122640441	122640615	+
GWHAAZE00000001	exon	122640708	122640979	+
GWHAAZE00000001	exon	122641455	122641550	+
GWHAAZE00000001	exon	122641646	122641997	+
GWHAAZE00000001	exon	122642426	122642568	+
GWHAAZE00000001	exon	122642988	122643104	+
GWHAAZE00000001	CDS	122638366	122638586	+
GWHAAZE00000001	CDS	122638698	122638815	+
GWHAAZE00000001	CDS	122639049	122639237	+
GWHAAZE00000001	CDS	122639426	122639866	+
GWHAAZE00000001	CDS	122639951	122640052	+
GWHAAZE00000001	CDS	122640159	122640359	+
GWHAAZE00000001	CDS	122640441	122640615	+
GWHAAZE00000001	CDS	122640708	122640979	+
GWHAAZE00000001	CDS	122641455	122641550	+
GWHAAZE00000001	CDS	122641646	122641997	+
GWHAAZE00000001	CDS	122642426	122642568	+
GWHAAZE00000001	CDS	122642988	122643104	+

Transcript Sequence
>GWHTAAZE004812 ATGTTTGATACTAGCCACCACCATCATCATTTGCTTGATATGGCTCACAAAGTCACTGAAGATGAGTTGGATCTAATTCGGGACGATGAATTCGAGAGCAAATCAGGGACGGATATAATGGAAGCCCCCTCCGGTGATGATCAAGATCAAGATCCCAATCAACGCCCCAAAAAGAAGCGCTACCATCGCCACACTCAGCATCAAATCCAAGAAATGGAAGGGTTTTTTAAAGAGTGCCCTCACCCGGATGATAAGCAAAGGAAGGAACTGGGGCGTAGATTAGGGTTAGAGCCTTTGCAAGTCAAATTTTGGTTCCAAAACAAGCGCACTCAAATGAAGGCTCAACATGAAAGGCACGAGAACACGGCGCTGAGAAATGAGAACGAAAAGCTTCGAGCAGAGAACGCAAGGTACAAAGAAGCCCTGGCCACCGCAGCTTGTCCCAGCTGCGGTGGTCCTGCTGCTATAGGCGAGATGTCATTTGACGAGCAGCATTTGAGGATCGAAAATGCTCGTTTAAGAGACGAGATTGATAGGATATCTGGAATTGCAGCAAAATATGTCGGAAAGCCAATGCTTACATATCCTCATCTTCCTCTTCCTGGACAATCGCGTTCACTTGACTTAGGGGTCGGAAATTTTGGGCCACAATCGAGCATTATGGGGGAGATATTCGGAGCCGGCGACCTTCTCCGGTCAGTGTCCGGCCCTACTGAGGCAGACAAGCCTATGATCATTGAGCTTGCAGTTGCAGCCATGGAGGAACTAATCAGAATGGCTCAGGCCGGGGACCCCTTATGGATGCCGAGTGCTGATATCTCCACTGAGAGCTTAAGTGAAGATGAGTACCTTCGGACTTTCCCCCGAGGAATAGGGCCAAAACCCTTGGGGCTGAAATCGGAAGCTTCACGTGAATCTGCTGTTGTTATCATGAATCATATTAACCTTGTTGAAATCCTTATGGATGTGAATCAATGGTCAAATGTGTTTTCAAGCATTGTTTCGAGGGCGATGACCTTGGAAGTCCTCTCAACTGGCGTGGCTGGGAACTACAATGGAGCTTTGCAAGTGATGACAGCCGAGTTTCAAGTGCCTTCGCCTCTAGTCCCAACGCGTGAAAACTATTTTGTAAGGTACTGTAAACAGCACACTGACGGTACATGGGCAGTGGTTGATGTCTCATTGGACAATTTGCGCCCTACTTCAGTATCACGCTGTAGAAGAAGGCCTTCCGGTTGTATAATTCAAGAATTGCCTAATGGCTACTCAAAGGTGACATGGGTTGAACATGTTGAAGTGGATGATAGAGCGGTTCACAGTATATACAGGTCACTAGTAAATGCAGGTCTTGCATTCGGTGCAAAACGCTGGGTGACAACATTGGACCGGCAGTGTGAACGCCTTGCAAGTGCAATGGCCAACAACATTCCAGCAGGAGACGTCGGTGTGATAACAAGTCCAGAAGGGAGAAAGAGTATGTTAAAGCTGGCGGAGAGAATGGTGCAAAGTTTTTGCAGTGGAGTTGGTGCTTCTACTGCGCACACATGGACAACGTTATCGGGAAGCGGTGCTGACGATGTAAGGGTGATGACCAGAAAGAGTATGGACGATCCAGGCAGGCCACCTGGCATCGTACTAAGCGCCGCCACTTCATTTTGGATTCCAGTTACACCCAGAAGGGTATTTGATTTTCTTCGTGATGAGAACTCTCGGAGCGAGTGGGATATCCTTTCAAATGGTGGCTTAGTTCAAGAAATGGCACACATAGCAAATGGGCGTGAGCCAGGAAACTGCGTCTCTCTACTGCGTGTTAATAGTGCGAACTCGAGCCAAAGCAATATGCTCATACTACAGGAGAGTAGCACTGACTCTACAGGCTCTTATGTTATATACGCACCTGTGGATATTGTTGCTATGAATGTGGTGTTAAGTGGGGGTGACCCTGATTATGTTGCGCTCTTACCATCTGGTTTTGCAATACTTCCTGATGGATCTGGACAAGATGTTGGTGGAATTCTTGAGGTTGGGTCTGGTGGATCTCTTCTAACTGTCGCGTTTCAGATTTTGGTGGATTCAGTTCCAACAGCAAAACTGTCTCTTGGATCAGTAGCAACTGTTAACAGTCTTATCAAATGCACAGTTGAGAGGATCAAAGGTGCACTGGCATTATGGTCAGAGAGAAGACAAAAGATAAGGCAGTGTTTACTATTTCATCCGAAACCCGAGGGAAGAAGTCAAGAACGCACCTTAGATGATCCTTGTTCTGTGGTGTTTGCCAGCAGCAAGAAAGCATTTCACCACCCTGCAAGGACTCATAGTGTATCATCGTCCCAAGCGAGCAGTTGCGAGTTTGGTGTTCTAAGACCAGATCTCACCGGATGGTTTGAGAAGTTATCTGGTAAATCAATGCCAAAATCCAGTGGTTGA

Network for GWHGAAZE004806

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	58	113	3.80E-17
PF01852.20	START	248	467	3.10E-59

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0008289	molecular_function	lipid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.687
	SRR3591706	second leaf	11.862
	SRR3591707	mature leaf	13.731
	SRR3591708	Shoot apex	31.655
	SRR3591709	Stem	2.520
	SRR3591710	White floral bud	13.102
	SRR3591711	White flower	9.232
	SRR3591712	Green floral bud	17.482
	SRR3591713	Yellow flower	3.524
SRP173429	SRR8316895	Juvenile bud stage	19.028
	SRR8316896	Juvenile bud stage	28.411
	SRR8316897	Juvenile bud stage	12.291
	SRR8316894	Third green stage	8.833
	SRR8316900	Third green stage	24.662
	SRR8316901	Third green stage	27.262
	SRR8316898	Complete white stage	4.346
	SRR8316899	Complete white stage	25.114
	SRR8316903	Complete white stage	8.452
	SRR8316902	Silver flowering stage	3.616
	SRR8316904	Silver flowering stage	4.463
	SRR8316905	Silver flowering stage	2.445
	SRR8316906	Gold flowering stage	8.127
	SRR8316907	Gold flowering stage	8.119
	SRR8316908	Gold flowering stage	6.413
SRP132670	SRR6706286	Control	22.601
	SRR6706287	Light intensity 50%	22.777
	SRR6706288	Light intensity 20%	26.186
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.046
	CNS0095593	Slightly white alabastrum(diploid) 2	7.116
	CNS0095594	Slightly white alabastrum(diploid) 3	9.182
	CNS0095595	Whole white alabastrum(diploid) 2	7.775
	CNS0095596	Whole white alabastrum(diploid) 3	5.713
	CNS0095597	Whole white alabastrum(diploid) 4	7.410
	CNS0095598	Silvery flower (diploied) 1	13.622
	CNS0095599	Silvery flower (diploied) 2	8.333
	CNS0095600	Silvery flower (diploied) 3	11.960
	CNS0095601	Golden flower (diploid) 1	11.850
	CNS0095602	Golden flower (diploid) 2	10.077
	CNS0095603	Golden flower (diploid) 3	12.279
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.086
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.510
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.156
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.776
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.087
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.823
	CNS0095610	Silvery flower (tetraploid) 1	11.620
	CNS0095611	Silvery flower (tetraploid) 2	16.098
	CNS0095612	Silvery flower (tetraploid) 3	15.427
	CNS0095613	Golden flower (tetraploid) 1	7.149
	CNS0095614	Golden flower (tetraploid) 2	10.499
	CNS0095615	Golden flower (tetraploid) 3	8.127
CRA001975	CRR073297	Stem 1	28.201
	CRR073298	Stem 2	25.097
	CRR073299	Stem 3	14.774
	CRR073300	Leaf 1	22.751
	CRR073301	Leaf 2	26.238
	CRR073302	Leaf 3	17.975
	CRR073303	Juvenile bud 1	19.039
	CRR073304	Juvenile bud 2	18.540
	CRR073305	Juvenile bud 3	19.570
	CRR073306	Third green 1	6.091
	CRR073307	Third green 2	1.724
	CRR073308	Third green 3	5.515
	CRR073309	Second white 1	3.767
	CRR073310	Second white 2	3.338
	CRR073311	Second white 3	5.904
	CRR073312	Silver flowering 1	2.880
	CRR073313	Silver flowering 2	3.791
	CRR073314	Silver flowering 3	3.825
	CRR073315	Gold flowering 1	11.793
	CRR073316	Gold flowering 2	10.139
	CRR073317	Gold flowering 3	9.627
	CRR073318	Tawny withering 1	1.560
	CRR073319	Tawny withering 2	1.678
	CRR073320	Tawny withering 3	0.103