Gene detail

Detail information of GWHGAAZE004814

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006389660.1	0	adenosine/AMP deaminase family protein [Populus trichocarpa]
trEMBL	tr\|U7E1R7\|U7E1R7_POPTR	0	Adenosine/AMP deaminase family protein {ECO:0000313\|EMBL:ERP48574.1}
TAIR10	AT4G04880.1	2E-132	adenosine/AMP deaminase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	122781555	122785347	+
GWHAAZE00000001	mRNA	122781555	122785347	+
GWHAAZE00000001	exon	122781555	122781631	+
GWHAAZE00000001	exon	122781806	122781876	+
GWHAAZE00000001	exon	122781957	122782048	+
GWHAAZE00000001	exon	122782130	122782189	+
GWHAAZE00000001	exon	122782679	122782912	+
GWHAAZE00000001	exon	122783012	122783088	+
GWHAAZE00000001	exon	122783182	122783251	+
GWHAAZE00000001	exon	122783338	122783451	+
GWHAAZE00000001	exon	122785006	122785126	+
GWHAAZE00000001	exon	122785223	122785347	+
GWHAAZE00000001	CDS	122781555	122781631	+
GWHAAZE00000001	CDS	122781806	122781876	+
GWHAAZE00000001	CDS	122781957	122782048	+
GWHAAZE00000001	CDS	122782130	122782189	+
GWHAAZE00000001	CDS	122782679	122782912	+
GWHAAZE00000001	CDS	122783012	122783088	+
GWHAAZE00000001	CDS	122783182	122783251	+
GWHAAZE00000001	CDS	122783338	122783451	+
GWHAAZE00000001	CDS	122785006	122785126	+
GWHAAZE00000001	CDS	122785223	122785347	+

Transcript Sequence
>GWHTAAZE004820 ATGGATTGGTGGGTATCGATTCCAAAGGTAGAACTTCATGCCCACCTTAATGGGTCCATTAGAAACTCCACTCTACTAGAACTTGCAAGAGATTTGGGTGAAAAGGGCACCATAGTTTTCTCAGATGTTGAGCATGTTATCTTGAAAAACGATCGTTCACTTGTAGAAGTGTTCAAGTTGTTTGATTTAATCCACATTCTTACAACTGATCACAAAACCATCACTAGAATTACTAAAGAAGTTGTTGAAGATTTTGCTGCTGAAAATGTTGTCTATTTGGAGTTAAGAACAACTCCCAAGAGAAATGATTCAATATCCATGAGCAAGCGATCATATGTGGAAGCGGTGATGGAGGGCTTAAGGGCTGTGAGTTCTGTGGAAGTTGATTTTGCTTATTGCAATTTGGGCAGAGGAGGTTCAGTTAATTCTTGTGCTAACAGTGGTATATGCAATGGAACTAGAAGAAAGAAGATATATGTTAGATTACTTCTCAGCATTGACCGTCGCGAGACTACTGCTGCTGCAATGGAGACTGTTAATCTTGCATTGGAAATGAGACATTTGGGAGTAGTGGGTATTGACCTTTCTGGCAATCCTATAGTTGGCAAATGGGAAACTTTTGTGCCAGCGTTGAAGTTTGCCAGGGAGAAGGATCTCTTAATCACGCTTCATTGTGGCGAGGTGCGGAATCTGGAGGAGATCCATGCGATGTTAAATTTTCTTCCTGAAAGAATTGGCCATGCTTGTTGCTTTGAAGATGAAGAATGGAGGAAGTTGAAATCATCCAAGATCCCGCATATTTGCCTTGCAGCTGATCTGTATAGAGCAAAACATCCAATAGTCCTATGTACCGATGATACAGGAGTATTCTCTACCAGTCTTTCGAACGAATATGCCCTTGCCTCTTCTTCATTTGATCTAGGAAAGGTTGAAATGCTACAGCTGGCAAAGAATGCCGTTGATTTTATATTTGCGGGTGATGGGGTGAAGAGCGAATTGATGAAGATTTTTGCTTTTGCTGCTAATGAGCTTAATTTGTGA

Network for GWHGAAZE004814

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00962.23	A_deaminase	7	124	8.10E-11
PF00962.23	A_deaminase	146	247	3.50E-08
PF00962.23	A_deaminase	275	334	1.30E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01488	add, ADA	Metabolic pathways	map01100
K01488	add, ADA	Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0019239	molecular_function	deaminase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.061
	SRR3591706	second leaf	25.935
	SRR3591707	mature leaf	8.220
	SRR3591708	Shoot apex	43.585
	SRR3591709	Stem	15.984
	SRR3591710	White floral bud	18.797
	SRR3591711	White flower	19.168
	SRR3591712	Green floral bud	35.317
	SRR3591713	Yellow flower	24.026
SRP173429	SRR8316895	Juvenile bud stage	32.024
	SRR8316896	Juvenile bud stage	40.077
	SRR8316897	Juvenile bud stage	23.778
	SRR8316894	Third green stage	16.801
	SRR8316900	Third green stage	48.435
	SRR8316901	Third green stage	42.026
	SRR8316898	Complete white stage	7.870
	SRR8316899	Complete white stage	49.223
	SRR8316903	Complete white stage	13.466
	SRR8316902	Silver flowering stage	7.412
	SRR8316904	Silver flowering stage	10.989
	SRR8316905	Silver flowering stage	5.255
	SRR8316906	Gold flowering stage	26.861
	SRR8316907	Gold flowering stage	25.044
	SRR8316908	Gold flowering stage	30.946
SRP132670	SRR6706286	Control	19.297
	SRR6706287	Light intensity 50%	24.661
	SRR6706288	Light intensity 20%	27.229
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.805
	CNS0095593	Slightly white alabastrum(diploid) 2	32.184
	CNS0095594	Slightly white alabastrum(diploid) 3	32.039
	CNS0095595	Whole white alabastrum(diploid) 2	29.870
	CNS0095596	Whole white alabastrum(diploid) 3	30.750
	CNS0095597	Whole white alabastrum(diploid) 4	28.994
	CNS0095598	Silvery flower (diploied) 1	30.071
	CNS0095599	Silvery flower (diploied) 2	27.352
	CNS0095600	Silvery flower (diploied) 3	18.349
	CNS0095601	Golden flower (diploid) 1	27.372
	CNS0095602	Golden flower (diploid) 2	23.046
	CNS0095603	Golden flower (diploid) 3	20.675
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.820
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.414
	CNS0095606	Slightly white alabastrum(tetraploid) 3	65.131
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.800
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.431
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.231
	CNS0095610	Silvery flower (tetraploid) 1	33.115
	CNS0095611	Silvery flower (tetraploid) 2	27.122
	CNS0095612	Silvery flower (tetraploid) 3	20.995
	CNS0095613	Golden flower (tetraploid) 1	20.735
	CNS0095614	Golden flower (tetraploid) 2	27.916
	CNS0095615	Golden flower (tetraploid) 3	16.397
CRA001975	CRR073297	Stem 1	28.639
	CRR073298	Stem 2	30.792
	CRR073299	Stem 3	21.920
	CRR073300	Leaf 1	27.845
	CRR073301	Leaf 2	27.415
	CRR073302	Leaf 3	21.180
	CRR073303	Juvenile bud 1	17.164
	CRR073304	Juvenile bud 2	10.131
	CRR073305	Juvenile bud 3	11.426
	CRR073306	Third green 1	1.031
	CRR073307	Third green 2	0.885
	CRR073308	Third green 3	1.472
	CRR073309	Second white 1	2.657
	CRR073310	Second white 2	4.128
	CRR073311	Second white 3	3.607
	CRR073312	Silver flowering 1	2.212
	CRR073313	Silver flowering 2	1.301
	CRR073314	Silver flowering 3	1.625
	CRR073315	Gold flowering 1	5.282
	CRR073316	Gold flowering 2	6.295
	CRR073317	Gold flowering 3	4.294
	CRR073318	Tawny withering 1	17.131
	CRR073319	Tawny withering 2	16.277
	CRR073320	Tawny withering 3	10.611