Gene detail

Detail information of GWHGAAZE004818

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP04377.1	2.5787E-180	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FE20\|PBS1_ARATH	3E-144	Serine/threonine-protein kinase PBS1
trEMBL	tr\|A0A068U7U9\|A0A068U7U9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313\|EMBL:CDP04377.1}
TAIR10	AT3G20530.1	1E-128	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	122818476	122820520	-
GWHAAZE00000001	mRNA	122818476	122820520	-
GWHAAZE00000001	exon	122818476	122818664	-
GWHAAZE00000001	exon	122818853	122819244	-
GWHAAZE00000001	exon	122819418	122819607	-
GWHAAZE00000001	exon	122819687	122819868	-
GWHAAZE00000001	exon	122820400	122820520	-
GWHAAZE00000001	CDS	122820400	122820520	-
GWHAAZE00000001	CDS	122819687	122819868	-
GWHAAZE00000001	CDS	122819418	122819607	-
GWHAAZE00000001	CDS	122818853	122819244	-
GWHAAZE00000001	CDS	122818476	122818664	-

Transcript Sequence
>GWHTAAZE004824 ATGAGGAAAAATACTTTGAGATCCACTAAGAGTACTTTGACGGATGCAAAGAACATCCCGGCTAAATATGACGATGCAGACGCATTGGCCACCATTGTGAGGAGTATGTCCATGCATTCAGGCGCCACTAAGCAGAGATTAATAGCAGAAGAAATACTTAGGTATGGAAATGCAAAACCAGCTGCAGAGGTTTTTACTTTTCGTGAACTCGCCACTGCAACTGACAACTTCAGCCAGGACTTGCTTGTGGGCGAAGGAGGATTCGGAAGGGTTTACAAAGGAACTATTACTCACAAAAACCAAATTGTGGCAGTAAAACAAATTGACAGGAATAGAGCACAAGGAAACAAAGAATTCCTCGCCGAGGTTTTGACATTAAGTCTTGTTAATCACCCAAACCTTGTGGATTTGGTTGGATATTGCTCTGATGGAAACCAAAGACTTTTAGTATCCGAATACATGCCCAAGGGATCATTGGACCAACATCTCTATGGTGTGTGCAAAGATAAAAAGAGACCTTTGGATTGGTACACGCGAATGAAAATAGCAAAAGGAGCTGCTTCTGGGCTTGAATATTTGCATGATGTTTCCAACCCTCCAATTATCTATCGCGACTTTAAAACATCTAACATATTATTAGACAGCGAATTCAACCCAAAGCTCTCAGATTTCGGACTTTCTAAATTAGGCCTAACAACAGCGGACAAGGCAAACGCATCTACAAGGGTGATGACCTATGGCTATTCTGCTCCAGAGTATTCATCAGGCCAGCTCACCACTAAGTCCGACGTTTACAGCTTTGGAGTCGTTTTTCTTGAGATTATCTCAGGGAGGAAAGCTATTGATACAACAAGACCACCAGATGAGCAAAATCTGGTTACTTGGGCACAACCATTGTTTAAAGACAAAACGAAGTTTGAGTTAATGGCTGATCCATCGCTTAAAGGGAAGTACCCTGTAAAGGATCTTTATCAAGCTCTGGCTGTTGCAGCTATGTGTCTACAAGAGGAAGCTAGCACCAGACCTTTCATCAGCGACGTTGTTACTACACTCGAGTATCTGTCCGTGAAATAG

Network for GWHGAAZE004818

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	81	347	5.10E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.998
	SRR3591706	second leaf	0.116
	SRR3591707	mature leaf	0.093
	SRR3591708	Shoot apex	0.312
	SRR3591709	Stem	2.053
	SRR3591710	White floral bud	159.308
	SRR3591711	White flower	2.676
	SRR3591712	Green floral bud	194.716
	SRR3591713	Yellow flower	1.693
SRP173429	SRR8316895	Juvenile bud stage	1.441
	SRR8316896	Juvenile bud stage	8.039
	SRR8316897	Juvenile bud stage	6.765
	SRR8316894	Third green stage	10.569
	SRR8316900	Third green stage	110.058
	SRR8316901	Third green stage	102.533
	SRR8316898	Complete white stage	0.468
	SRR8316899	Complete white stage	0.647
	SRR8316903	Complete white stage	0.485
	SRR8316902	Silver flowering stage	2.184
	SRR8316904	Silver flowering stage	4.295
	SRR8316905	Silver flowering stage	0.868
	SRR8316906	Gold flowering stage	0.405
	SRR8316907	Gold flowering stage	0.481
	SRR8316908	Gold flowering stage	0.270
SRP132670	SRR6706286	Control	66.437
	SRR6706287	Light intensity 50%	63.217
	SRR6706288	Light intensity 20%	60.298
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	71.762
	CNS0095593	Slightly white alabastrum(diploid) 2	57.504
	CNS0095594	Slightly white alabastrum(diploid) 3	61.007
	CNS0095595	Whole white alabastrum(diploid) 2	256.426
	CNS0095596	Whole white alabastrum(diploid) 3	310.194
	CNS0095597	Whole white alabastrum(diploid) 4	384.783
	CNS0095598	Silvery flower (diploied) 1	5.933
	CNS0095599	Silvery flower (diploied) 2	29.186
	CNS0095600	Silvery flower (diploied) 3	5.341
	CNS0095601	Golden flower (diploid) 1	6.614
	CNS0095602	Golden flower (diploid) 2	3.648
	CNS0095603	Golden flower (diploid) 3	4.575
	CNS0095604	Slightly white alabastrum(tetraploid) 1	154.369
	CNS0095605	Slightly white alabastrum(tetraploid) 2	166.354
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.925
	CNS0095607	Whole white alabastrum(tetraploid) 1	418.612
	CNS0095608	Whole white alabastrum(tetraploid) 2	544.261
	CNS0095609	Whole white alabastrum(tetraploid) 3	207.067
	CNS0095610	Silvery flower (tetraploid) 1	1.106
	CNS0095611	Silvery flower (tetraploid) 2	9.315
	CNS0095612	Silvery flower (tetraploid) 3	32.261
	CNS0095613	Golden flower (tetraploid) 1	4.618
	CNS0095614	Golden flower (tetraploid) 2	1.284
	CNS0095615	Golden flower (tetraploid) 3	23.518
CRA001975	CRR073297	Stem 1	6.252
	CRR073298	Stem 2	7.697
	CRR073299	Stem 3	3.294
	CRR073300	Leaf 1	82.672
	CRR073301	Leaf 2	40.157
	CRR073302	Leaf 3	20.074
	CRR073303	Juvenile bud 1	80.056
	CRR073304	Juvenile bud 2	53.980
	CRR073305	Juvenile bud 3	5.468
	CRR073306	Third green 1	35.278
	CRR073307	Third green 2	45.666
	CRR073308	Third green 3	37.561
	CRR073309	Second white 1	3.840
	CRR073310	Second white 2	6.272
	CRR073311	Second white 3	6.403
	CRR073312	Silver flowering 1	34.203
	CRR073313	Silver flowering 2	35.709
	CRR073314	Silver flowering 3	17.373
	CRR073315	Gold flowering 1	41.271
	CRR073316	Gold flowering 2	9.587
	CRR073317	Gold flowering 3	23.478
	CRR073318	Tawny withering 1	29.909
	CRR073319	Tawny withering 2	27.949
	CRR073320	Tawny withering 3	32.116