Gene detail

Detail information of GWHGAAZE004823

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011096084.1	4.1665E-161	PREDICTED: polyadenylate-binding protein RBP45 isoform X1 [Sesamum indicum]
Swissprot	tr\|Q9LEB4\|RBP45_NICPL	2E-131	Polyadenylate-binding protein RBP45
trEMBL	tr\|K4B9R3\|K4B9R3_SOLLC	3E-162	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g080420.2.1}
TAIR10	AT1G11650.2	1E-102	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	122881939	122887058	+
GWHAAZE00000001	mRNA	122881939	122887058	+
GWHAAZE00000001	exon	122881939	122882265	+
GWHAAZE00000001	exon	122883593	122883755	+
GWHAAZE00000001	exon	122883829	122884062	+
GWHAAZE00000001	exon	122886295	122886350	+
GWHAAZE00000001	exon	122886431	122886561	+
GWHAAZE00000001	exon	122886660	122886756	+
GWHAAZE00000001	exon	122886834	122887058	+
GWHAAZE00000001	CDS	122881939	122882265	+
GWHAAZE00000001	CDS	122883593	122883755	+
GWHAAZE00000001	CDS	122883829	122884062	+
GWHAAZE00000001	CDS	122886295	122886350	+
GWHAAZE00000001	CDS	122886431	122886561	+
GWHAAZE00000001	CDS	122886660	122886756	+
GWHAAZE00000001	CDS	122886834	122887058	+

Transcript Sequence
>GWHTAAZE004829 ATGATGCAACCAGCAACAACCGCGGTTCCACAACCCATGGATCCTGAATACCAACAACAACAACATCAACAATGGATGATGATGAATCAACCACCACTGCAGCAGCAACAATCACAATTTCAGCCTCAACCGCCAATGTATTACTACCAGCAACCACCGCCTCAGCAGGCTGCGGCGGCACCACCACTTCCAGCGCAGCAGCAACCCAAATATGCTGTGGCTGCACAGCCGACTAGCGCCGATGAGATCCGTACACTATGGATCGGAGATCTCCAGTACTGGATGGATGAGCAGTATCTCGTTATTTGTTTCGCTCAATCTGGCGAGGTGGTTTCTGCGAAAGTTATCCGTAATAAGCAAACTGCTCAATCGGAAGGTTATGGATTCATTGAGTTTGTTAATCGTGCTGCTGCAGAAAGGAATTTACAGACATTTAATGGAACACTGATGCCAAACGTCGAGTTTCAGACTGAATTGGGCATCTTTTGGTATAATATGCTTCAAGAGACATTTAGGGCCCACTACTCTTCAGTTAGGAGTGCAAAAGTTGTAACTGATAGGGTCACTGGCCGCGCAAAGGGTTATGGGTTTGTTAAGTTCGGAGATGAAAGCGAACAATTGCGTGCTATGACTGAGATGAATAGGAAGTTTTGCTCAACAAGGCCTATGCGTATTGGACCAACTGCTAACAAGAAGAATGAGGGAAGTCAGCAATACCCAAAAGCTTCTTATGACAATTCTCAAGGAACTCAGAATGAGGATGATCCAAATAATACAACCATTTTTGTTGGTGGTTTGGACTCCAATGTTACGGATGAATACCTGAGACAAGTTTTTAGCCAACATGGACAGTTAGTTCATGTGAAAATACCAGTAGGCAAGCGATGTGGGTTTGTTCAATTTGCTGAAAGAAGTTGTGCAGAGGAAGCATTAAGGATGCTAAATGGAACTCAATTGGGTGGACAAAACATTCGACTTTCTTGGGGCCGTAGTCCTTCGAACAAACAGGATGCATCATCTTCTGGATTTGTGCAGCCTCAGGCAGATCCAAACCAGTGGAATGGTGGATATTATGTATATTCACAAGCGTATGAAACTTACGGATATGCCCCTGCTGTGCAAGATCCTAATCTGTACTATGGAGGATACTTTGGATACGGAAACTATCCACAGGCCCAGCAGCCGCAGCCACAGCCACAGGTAGAGTATTCATATGTACTGTTTGAGATTTGA

Network for GWHGAAZE004823

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0221

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	86	152	2.90E-11
PF00076.23	RRM_1	166	221	3.40E-09
PF00076.23	RRM_1	261	325	2.70E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.778
	SRR3591706	second leaf	25.423
	SRR3591707	mature leaf	29.020
	SRR3591708	Shoot apex	21.792
	SRR3591709	Stem	22.413
	SRR3591710	White floral bud	13.433
	SRR3591711	White flower	12.805
	SRR3591712	Green floral bud	16.131
	SRR3591713	Yellow flower	11.186
SRP173429	SRR8316895	Juvenile bud stage	7.241
	SRR8316896	Juvenile bud stage	10.817
	SRR8316897	Juvenile bud stage	2.686
	SRR8316894	Third green stage	7.506
	SRR8316900	Third green stage	17.862
	SRR8316901	Third green stage	17.666
	SRR8316898	Complete white stage	7.626
	SRR8316899	Complete white stage	20.544
	SRR8316903	Complete white stage	13.090
	SRR8316902	Silver flowering stage	5.820
	SRR8316904	Silver flowering stage	9.098
	SRR8316905	Silver flowering stage	4.412
	SRR8316906	Gold flowering stage	11.857
	SRR8316907	Gold flowering stage	9.140
	SRR8316908	Gold flowering stage	9.770
SRP132670	SRR6706286	Control	19.600
	SRR6706287	Light intensity 50%	21.096
	SRR6706288	Light intensity 20%	21.946
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.559
	CNS0095593	Slightly white alabastrum(diploid) 2	13.751
	CNS0095594	Slightly white alabastrum(diploid) 3	9.672
	CNS0095595	Whole white alabastrum(diploid) 2	11.685
	CNS0095596	Whole white alabastrum(diploid) 3	9.138
	CNS0095597	Whole white alabastrum(diploid) 4	9.232
	CNS0095598	Silvery flower (diploied) 1	15.698
	CNS0095599	Silvery flower (diploied) 2	5.586
	CNS0095600	Silvery flower (diploied) 3	6.871
	CNS0095601	Golden flower (diploid) 1	6.728
	CNS0095602	Golden flower (diploid) 2	5.016
	CNS0095603	Golden flower (diploid) 3	7.699
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.901
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.302
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.241
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.688
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.616
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.087
	CNS0095610	Silvery flower (tetraploid) 1	8.443
	CNS0095611	Silvery flower (tetraploid) 2	6.442
	CNS0095612	Silvery flower (tetraploid) 3	5.824
	CNS0095613	Golden flower (tetraploid) 1	7.404
	CNS0095614	Golden flower (tetraploid) 2	8.689
	CNS0095615	Golden flower (tetraploid) 3	7.402
CRA001975	CRR073297	Stem 1	20.857
	CRR073298	Stem 2	15.949
	CRR073299	Stem 3	6.120
	CRR073300	Leaf 1	16.080
	CRR073301	Leaf 2	14.679
	CRR073302	Leaf 3	5.562
	CRR073303	Juvenile bud 1	5.983
	CRR073304	Juvenile bud 2	3.249
	CRR073305	Juvenile bud 3	6.056
	CRR073306	Third green 1	1.482
	CRR073307	Third green 2	0.964
	CRR073308	Third green 3	1.401
	CRR073309	Second white 1	0.805
	CRR073310	Second white 2	1.175
	CRR073311	Second white 3	1.628
	CRR073312	Silver flowering 1	1.551
	CRR073313	Silver flowering 2	1.291
	CRR073314	Silver flowering 3	0.785
	CRR073315	Gold flowering 1	5.434
	CRR073316	Gold flowering 2	10.892
	CRR073317	Gold flowering 3	2.228
	CRR073318	Tawny withering 1	7.848
	CRR073319	Tawny withering 2	12.596
	CRR073320	Tawny withering 3	6.730