Gene detail

Detail information of GWHGAAZE004842

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009772723.1	PREDICTED: glucan endo-1,3-beta-glucosidase 1 [Nicotiana sylvestris]
Swissprot	tr\|O65399\|E131_ARATH	Glucan endo-1,3-beta-glucosidase 1 (Precursor)
trEMBL	tr\|M1BD42\|M1BD42_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400042484}
TAIR10	AT1G11820.2	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	123213869	123215494	+
GWHAAZE00000001	mRNA	123213869	123215494	+
GWHAAZE00000001	exon	123213869	123214072	+
GWHAAZE00000001	exon	123214161	123215494	+
GWHAAZE00000001	five_prime_UTR	123213869	123213963	+
GWHAAZE00000001	CDS	123213964	123214072	+
GWHAAZE00000001	CDS	123214161	123215494	+

Transcript Sequence
>GWHTAAZE004848 AAACAATAATAGCTCAAAACCCACACCCAACACATAATAATATTAATAATAAACCTTCAAGATAATGCAACGGCTAGCTGAACCAGTAGCTGAAGATGAAACAACTAGAGCTTCAACTTCTCTCTAATGGAAGATCTAAGCTCACTCTGTTCTCTCTCCTATTCTTGTTCCTCTTCTCCACAGCACTCCCCACTTTCACACCAGAGATTAAGCAACAGCAGAACAGAGATGAACCCTATGTGGGAGTAAACATAGGCACTGATGTCTCGAATTCACTTTCACCTTCGGAGTTAGTTTCATTTCTACAGTTACAAAAGATCACTCACATTCGTCTCTATGATGCAGACCCTGACATCCTTAAAGCCCTTTCGAAAACCAAGATTAGGGTCATCATCAGTGTGCCCAACAACCAAATCCTCGGAATTGGGTCCTCAAACACCACCGCCGCCACCTGGATCGGCCGCAATGTCGCCGCTTATTACCCGGAAACACTCATCACCGCCATTGCCGTGGGTGATGAGGTTTTGACCACAATACCCTCTTCATCTCCTATTCTTATGCCTGCAATTGAGTCACTCTATAGTGCTCTAGTAGCTGCCAATTTGCATAACCTAATCAAGATTTCAACCCCACATACTGCTTCAATTATTCTTGACCCATTTCCACCTTCTCAGGCCTATTTCAATCAAACCCTAACCCCGGTTCTTTCGCAGTTGCTTCAATTTCTATCAAGAACCAAATCCCCTCTTATGATGAATTTGTACCCTTACTATGTGTTTATGCAGAACAAAGGGGTTGTTCCTCTTGATAATTCTTTGTTCAAGCCTTTAACACCTTCTAAAGAAATGGTTGACCCTAATACATTGCTTCACTACACAAATGTGCTAGATGCTATGATTGATTCTGTGTATTTCTCTATGAAGAATTTGAACATTACTGATGTTACAGTTCTTGTTACTGAAAGTGGGTGGCCTTCAAAGGGTGACTCGAAAGAGCCTTATGCGACAATTGACAACGCGGATACTTATAATTCGAACTTGATTAAGCATGTTTTTGATGGGAGTGGAACCCCATTTCATCCTGAAATCACATCTAGTGTGTACATATACGAATTGTTGAATGAGGATTTGAGGTCACCGCCAGTTTCTGAGGCGAGTTGGGGGCTATTTTATGGGAATTTCACGCCAGTGTATTTGCTTCACGTGAGTGGAAGTGGTACATTTCTTGCTAATGATACCACTAATCAGACTTATTGTATAGCAATGGAGGGGGTGGATTCAAAGACTTTACAGACGGCGTTGGATTGGGCTTGTGGACCAGGGAGGGCGAATTGCAGCGAGATTCAACCAGGGGAGAATTGTTATCAGCCTAATAACGTGAAGAACCATGCTTCTTATGCATTTAATAGTTATTATCAGAAGGAAGGGAGGACTCCAGGGTCTTGTGACTTCAAGGGTGTGGCCATGATCACCACCACCGACCCAAGTAAGTGCTTCATTAAATTCTACAATGTGTTCCCAAGAATTCAAGAATTTTGA

Network for GWHGAAZE004842

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.19	Glyco_hydro_17	49	368	5.00E-71
PF07983.14	X8	386	457	8.50E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19891	GN1_2_3	Metabolic pathways	map01100
K19891	GN1_2_3	Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.242
	SRR3591706	second leaf	18.483
	SRR3591707	mature leaf	8.313
	SRR3591708	Shoot apex	31.106
	SRR3591709	Stem	12.305
	SRR3591710	White floral bud	4.468
	SRR3591711	White flower	4.992
	SRR3591712	Green floral bud	10.952
	SRR3591713	Yellow flower	1.321
SRP173429	SRR8316895	Juvenile bud stage	10.158
	SRR8316896	Juvenile bud stage	9.614
	SRR8316897	Juvenile bud stage	3.648
	SRR8316894	Third green stage	4.902
	SRR8316900	Third green stage	10.679
	SRR8316901	Third green stage	8.313
	SRR8316898	Complete white stage	0.765
	SRR8316899	Complete white stage	7.201
	SRR8316903	Complete white stage	0.890
	SRR8316902	Silver flowering stage	0.845
	SRR8316904	Silver flowering stage	2.076
	SRR8316905	Silver flowering stage	0.828
	SRR8316906	Gold flowering stage	4.588
	SRR8316907	Gold flowering stage	5.012
	SRR8316908	Gold flowering stage	4.787
SRP132670	SRR6706286	Control	9.134
	SRR6706287	Light intensity 50%	9.417
	SRR6706288	Light intensity 20%	11.645
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.845
	CNS0095593	Slightly white alabastrum(diploid) 2	7.396
	CNS0095594	Slightly white alabastrum(diploid) 3	5.525
	CNS0095595	Whole white alabastrum(diploid) 2	5.105
	CNS0095596	Whole white alabastrum(diploid) 3	3.298
	CNS0095597	Whole white alabastrum(diploid) 4	4.526
	CNS0095598	Silvery flower (diploied) 1	7.368
	CNS0095599	Silvery flower (diploied) 2	7.589
	CNS0095600	Silvery flower (diploied) 3	3.899
	CNS0095601	Golden flower (diploid) 1	4.151
	CNS0095602	Golden flower (diploid) 2	4.311
	CNS0095603	Golden flower (diploid) 3	4.224
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.120
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.261
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.898
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.085
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.542
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.671
	CNS0095610	Silvery flower (tetraploid) 1	2.488
	CNS0095611	Silvery flower (tetraploid) 2	1.689
	CNS0095612	Silvery flower (tetraploid) 3	0.844
	CNS0095613	Golden flower (tetraploid) 1	0.712
	CNS0095614	Golden flower (tetraploid) 2	1.450
	CNS0095615	Golden flower (tetraploid) 3	0.260
CRA001975	CRR073297	Stem 1	13.171
	CRR073298	Stem 2	13.007
	CRR073299	Stem 3	12.771
	CRR073300	Leaf 1	7.510
	CRR073301	Leaf 2	8.562
	CRR073302	Leaf 3	7.804
	CRR073303	Juvenile bud 1	4.346
	CRR073304	Juvenile bud 2	3.050
	CRR073305	Juvenile bud 3	6.187
	CRR073306	Third green 1	0.290
	CRR073307	Third green 2	0.115
	CRR073308	Third green 3	0.597
	CRR073309	Second white 1	0.289
	CRR073310	Second white 2	0.791
	CRR073311	Second white 3	0.564
	CRR073312	Silver flowering 1	0.163
	CRR073313	Silver flowering 2	0.202
	CRR073314	Silver flowering 3	0.456
	CRR073315	Gold flowering 1	5.750
	CRR073316	Gold flowering 2	7.088
	CRR073317	Gold flowering 3	6.521
	CRR073318	Tawny withering 1	10.539
	CRR073319	Tawny withering 2	11.997
	CRR073320	Tawny withering 3	12.536