Gene detail

Detail information of GWHGAAZE004847

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP04419.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|O49849\|GCST_FLAAN	Aminomethyltransferase, mitochondrial (Precursor)
trEMBL	tr\|A0A068U890\|A0A068U890_COFCA	Aminomethyltransferase {ECO:0000256\|RuleBase:RU003981}
TAIR10	AT1G11860.3	Glycine cleavage T-protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	123240723	123244114	+
GWHAAZE00000001	mRNA	123240723	123244114	+
GWHAAZE00000001	exon	123240723	123241283	+
GWHAAZE00000001	exon	123241618	123241736	+
GWHAAZE00000001	exon	123243571	123244114	+
GWHAAZE00000001	CDS	123240723	123241283	+
GWHAAZE00000001	CDS	123241618	123241736	+
GWHAAZE00000001	CDS	123243571	123244114	+

Transcript Sequence
>GWHTAAZE004853 ATGAGAGGAGGGGGTTTGTGGCAACTTGGGCAATCAATCACCCGCCGTCTTGCTCAGACTGACAAGAAGACCATAGCTCGAAGGTGCTTTGCCACAGAAGCGGATCTAAAGAAGACAGTTCTATACGACTTTCATGTTGCCCATGGTGGAAAGATGGTTCCTTTTGCAGGGTGGAGCATGCCGATCCAGTACAAGGACTCAATCATGGACTCTACAGTAAACTGTAGGGAGAATGGGAGCCTATTTGATGTTTCCCATATGTGTGGGCTAAGTCTCAAGGGAAAAGACTGCATCAAGTTTCTTGAAAAGCTGGTCATTGCTGATGTGGCTGGACTTGCCCCTGGAACTGGGACTCTGACTGTATTCACTAACGAGAAAGGAGGGGCCATTGACGATTCTGTCATCACCAAGGTGACTGATGATCATATATACCTGGTTGTAAATGCAGGATGTAGAGATAAGGATCTTGCGCACATCGAGGAGCATATGAAGGCATTCAAATCCAAAGGTGGAGATGTGTCTTGGCACATCCATGATGAGAGATCCCTTCTAGCTCTCCAGGGTCCTCTGGCAGGCCCAGTTCTTCAATACCTGACTAAGGATGATTTGAGCAAGTTTTACTTTGGAGAGTTTCGCATGTTGGATATCAATGGGGTACACTGCTTTCTCACTAGGACAGGGTACACAGGTGAGGATGGATTTGAGATATCAGTTCCTTCAGAGCACGCAGTGGATCTTGCAAAGGCAATTCTCGAAAAATCTGAATCGAAAGTAAGGCTGACAGGGCTGGGCGCTCGAGACAGTCTTAGGCTCGAGGCTGGACTCTGCTTGTATGGCAATGACATGGAACAGCACACAACACCTATAGAGGCCGGGCTCACATGGGCTGTGGGGAAGAGAAGAAGGGCCGAAGGTGGTTTTCTTGGTGCTGAGGTGATACTTAAGCAAATAGCGGATGGTCCATCGATCAGGCGAGTTGGCCTTTTTTCTTCAGGCCCACCAGCCAGAAGCCACAGTGAGATTCAGAATGAGAAGGGAGATAACATTGGGGAAGTTACCAGTGGAGGGTTCAGCCCCTGTCTCAAGAAGAACATAGCGATGGGTTATGTCAAATCTGGATTGCACAAGGCGGGCACCAAAGTTAAGATTGTGGTTCGCGGGAAATCTTATGATGGTGCAGTCACTAAAATGCCCTTTGTACCCGCGAAATATTACAAGCCTTAG

Network for GWHGAAZE004847

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01571.22	GCV_T	41	296	2.00E-89
PF08669.12	GCV_T_C	325	400	1.70E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00605	gcvT, AMT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Glycine, serine and threonine metabolism	map00260
		One carbon pool by folate	map00670

Gene Ontology

GO term	Ontology	Name
GO:0006546	biological_process	glycine catabolic process
GO:0005515	molecular_function	protein binding
GO:0004047	molecular_function	aminomethyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	184.182
	SRR3591706	second leaf	594.774
	SRR3591707	mature leaf	617.193
	SRR3591708	Shoot apex	238.866
	SRR3591709	Stem	151.470
	SRR3591710	White floral bud	93.330
	SRR3591711	White flower	107.847
	SRR3591712	Green floral bud	97.706
	SRR3591713	Yellow flower	90.618
SRP173429	SRR8316895	Juvenile bud stage	112.247
	SRR8316896	Juvenile bud stage	143.203
	SRR8316897	Juvenile bud stage	67.650
	SRR8316894	Third green stage	52.880
	SRR8316900	Third green stage	188.668
	SRR8316901	Third green stage	171.072
	SRR8316898	Complete white stage	58.366
	SRR8316899	Complete white stage	90.551
	SRR8316903	Complete white stage	65.842
	SRR8316902	Silver flowering stage	76.048
	SRR8316904	Silver flowering stage	88.427
	SRR8316905	Silver flowering stage	52.300
	SRR8316906	Gold flowering stage	177.468
	SRR8316907	Gold flowering stage	173.601
	SRR8316908	Gold flowering stage	193.424
SRP132670	SRR6706286	Control	141.007
	SRR6706287	Light intensity 50%	149.198
	SRR6706288	Light intensity 20%	158.279
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	146.776
	CNS0095593	Slightly white alabastrum(diploid) 2	118.490
	CNS0095594	Slightly white alabastrum(diploid) 3	128.583
	CNS0095595	Whole white alabastrum(diploid) 2	135.512
	CNS0095596	Whole white alabastrum(diploid) 3	166.785
	CNS0095597	Whole white alabastrum(diploid) 4	120.262
	CNS0095598	Silvery flower (diploied) 1	104.777
	CNS0095599	Silvery flower (diploied) 2	108.422
	CNS0095600	Silvery flower (diploied) 3	120.493
	CNS0095601	Golden flower (diploid) 1	96.633
	CNS0095602	Golden flower (diploid) 2	107.384
	CNS0095603	Golden flower (diploid) 3	107.219
	CNS0095604	Slightly white alabastrum(tetraploid) 1	160.161
	CNS0095605	Slightly white alabastrum(tetraploid) 2	168.852
	CNS0095606	Slightly white alabastrum(tetraploid) 3	169.660
	CNS0095607	Whole white alabastrum(tetraploid) 1	119.916
	CNS0095608	Whole white alabastrum(tetraploid) 2	119.206
	CNS0095609	Whole white alabastrum(tetraploid) 3	165.908
	CNS0095610	Silvery flower (tetraploid) 1	170.987
	CNS0095611	Silvery flower (tetraploid) 2	160.197
	CNS0095612	Silvery flower (tetraploid) 3	170.793
	CNS0095613	Golden flower (tetraploid) 1	136.423
	CNS0095614	Golden flower (tetraploid) 2	161.975
	CNS0095615	Golden flower (tetraploid) 3	134.650
CRA001975	CRR073297	Stem 1	196.212
	CRR073298	Stem 2	192.752
	CRR073299	Stem 3	251.376
	CRR073300	Leaf 1	161.532
	CRR073301	Leaf 2	154.374
	CRR073302	Leaf 3	193.452
	CRR073303	Juvenile bud 1	160.576
	CRR073304	Juvenile bud 2	160.098
	CRR073305	Juvenile bud 3	126.945
	CRR073306	Third green 1	170.974
	CRR073307	Third green 2	141.108
	CRR073308	Third green 3	139.946
	CRR073309	Second white 1	235.134
	CRR073310	Second white 2	149.139
	CRR073311	Second white 3	135.014
	CRR073312	Silver flowering 1	158.520
	CRR073313	Silver flowering 2	171.103
	CRR073314	Silver flowering 3	135.029
	CRR073315	Gold flowering 1	1273.891
	CRR073316	Gold flowering 2	1290.047
	CRR073317	Gold flowering 3	1188.034
	CRR073318	Tawny withering 1	165.071
	CRR073319	Tawny withering 2	117.665
	CRR073320	Tawny withering 3	174.350