Detail information of GWHGAAZE004848


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010258792.10PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Nelumbo nucifera]
Swissprottr|Q8H107|ODO2B_ARATH0Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial (Precursor)
trEMBLtr|M0TWH6|M0TWH6_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P01190_001}
TAIR10AT4G26910.13E-159Dihydrolipoamide succinyltransferase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene123245427123248887-
GWHAAZE00000001mRNA123245427123248887-
GWHAAZE00000001exon123245427123245618-
GWHAAZE00000001exon123246420123246641-
GWHAAZE00000001exon123246911123247021-
GWHAAZE00000001exon123247135123247225-
GWHAAZE00000001exon123247598123247692-
GWHAAZE00000001exon123247853123248134-
GWHAAZE00000001exon123248296123248340-
GWHAAZE00000001exon123248438123248493-
GWHAAZE00000001exon123248634123248708-
GWHAAZE00000001exon123248803123248887-
GWHAAZE00000001CDS123248803123248887-
GWHAAZE00000001CDS123248634123248708-
GWHAAZE00000001CDS123248438123248493-
GWHAAZE00000001CDS123248296123248340-
GWHAAZE00000001CDS123247853123248134-
GWHAAZE00000001CDS123247598123247692-
GWHAAZE00000001CDS123247135123247225-
GWHAAZE00000001CDS123246911123247021-
GWHAAZE00000001CDS123246420123246641-
GWHAAZE00000001CDS123245427123245618-
Transcript Sequence

Network for GWHGAAZE004848

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00364.23Biotin_lipoyl361054.90E-17
PF00198.242-oxoacid_dh1774152.10E-75
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00658DLST, sucB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Citrate cyclemap00020
Lysine degradationmap00310
Tryptophan metabolismmap00380

Gene Ontology

GO term OntologyName
GO:0006099biological_processtricarboxylic acid cycle
GO:0045252cellular_componentoxoglutarate dehydrogenase complex
GO:0016746molecular_functiontransferase activity, transferring acyl groups
GO:0004149molecular_functiondihydrolipoyllysine-residue succinyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf69.084
SRR3591706second leaf42.593
SRR3591707mature leaf27.553
SRR3591708Shoot apex59.851
SRR3591709Stem57.372
SRR3591710White floral bud163.084
SRR3591711White flower147.148
SRR3591712Green floral bud139.260
SRR3591713Yellow flower147.590
SRP173429 SRR8316895Juvenile bud stage 38.199
SRR8316896Juvenile bud stage 56.725
SRR8316897Juvenile bud stage 32.614
SRR8316894Third green stage 29.416
SRR8316900Third green stage 105.188
SRR8316901Third green stage 102.560
SRR8316898Complete white stage 68.790
SRR8316899Complete white stage 113.457
SRR8316903Complete white stage 89.936
SRR8316902Silver flowering stage59.897
SRR8316904Silver flowering stage89.179
SRR8316905Silver flowering stage43.463
SRR8316906Gold flowering stage 120.193
SRR8316907Gold flowering stage 124.858
SRR8316908Gold flowering stage 119.662
SRP132670SRR6706286Control68.530
SRR6706287Light intensity 50%76.182
SRR6706288Light intensity 20%88.149
CNP0000432CNS0095592Slightly white alabastrum(diploid) 156.478
CNS0095593Slightly white alabastrum(diploid) 265.352
CNS0095594Slightly white alabastrum(diploid) 353.269
CNS0095595Whole white alabastrum(diploid) 264.766
CNS0095596Whole white alabastrum(diploid) 382.530
CNS0095597Whole white alabastrum(diploid) 461.808
CNS0095598Silvery flower (diploied) 154.328
CNS0095599Silvery flower (diploied) 255.120
CNS0095600Silvery flower (diploied) 3131.382
CNS0095601Golden flower (diploid) 144.755
CNS0095602Golden flower (diploid) 293.756
CNS0095603Golden flower (diploid) 390.097
CNS0095604Slightly white alabastrum(tetraploid) 173.722
CNS0095605Slightly white alabastrum(tetraploid) 270.053
CNS0095606Slightly white alabastrum(tetraploid) 367.678
CNS0095607Whole white alabastrum(tetraploid) 165.895
CNS0095608Whole white alabastrum(tetraploid) 266.169
CNS0095609Whole white alabastrum(tetraploid) 393.816
CNS0095610Silvery flower (tetraploid) 1113.343
CNS0095611Silvery flower (tetraploid) 2120.660
CNS0095612Silvery flower (tetraploid) 3121.329
CNS0095613Golden flower (tetraploid) 182.132
CNS0095614Golden flower (tetraploid) 299.922
CNS0095615Golden flower (tetraploid) 388.924
CRA001975CRR073297Stem 165.958
CRR073298Stem 261.758
CRR073299Stem 353.832
CRR073300Leaf 193.123
CRR073301Leaf 280.300
CRR073302Leaf 392.057
CRR073303Juvenile bud 1129.489
CRR073304Juvenile bud 2139.182
CRR073305Juvenile bud 3100.815
CRR073306Third green 172.483
CRR073307Third green 269.952
CRR073308Third green 363.337
CRR073309Second white 1116.249
CRR073310Second white 293.399
CRR073311Second white 367.641
CRR073312Silver flowering 162.966
CRR073313Silver flowering 253.689
CRR073314Silver flowering 359.857
CRR073315Gold flowering 124.806
CRR073316Gold flowering 233.576
CRR073317Gold flowering 322.471
CRR073318Tawny withering 144.822
CRR073319Tawny withering 239.471
CRR073320Tawny withering 335.985