Gene detail

Detail information of GWHGAAZE004856

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009776377.1	6.2223E-154	PREDICTED: WRKY transcription factor 6-like isoform X3 [Nicotiana sylvestris]
Swissprot	tr\|Q9C519\|WRKY6_ARATH	7E-116	WRKY transcription factor 6
trEMBL	tr\|A9RAB4\|A9RAB4_COFAR	4E-152	Putative WRKY1b transcription factor {ECO:0000313\|EMBL:ABC86708.1}
TAIR10	AT1G62300.1	2E-80	WRKY family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	123350041	123352475	-
GWHAAZE00000001	mRNA	123350041	123352475	-
GWHAAZE00000001	exon	123352146	123352475	-
GWHAAZE00000001	exon	123351623	123351799	-
GWHAAZE00000001	exon	123351100	123351408	-
GWHAAZE00000001	exon	123350883	123350996	-
GWHAAZE00000001	exon	123350041	123350589	-
GWHAAZE00000001	CDS	123352146	123352475	-
GWHAAZE00000001	CDS	123351623	123351799	-
GWHAAZE00000001	CDS	123351100	123351408	-
GWHAAZE00000001	CDS	123350883	123350996	-
GWHAAZE00000001	CDS	123350041	123350589	-

Transcript Sequence
>GWHTAAZE004862 ATGGAAAAGGGATGGGCTTTCAGTACTTTTGATACTTCTGATTTTTTCATGAAAAAGCCGATCCTCGGTTTCAATTTAAGTCCAAAGTCGAATCACGTGAAATCTACTATGTTTTCCAGTACCGAGTTCCCGGTAAATCGTACCAATACAGAAGAACAAGCTACTACATCATCACCGTTGTATGAGAATCGGGTGGTTATGGCTGAGGTAGATTTCTTTTCCACCAAGTCACCAAATGATCATATTGATTCCAAAACCAGTAGTCATAATATTGCTGTCAAGGAGGAAAATTCACATGGAGATGCGACTTTGCCGTTAAATGATTCATATCTGAAACTATTGCAAGTGGAACTTAAGCAATTGAATGCCGAAAACCAGAGGTTGAGAGGGATGCTTACTCAAGTTAGCAACAATTACAGTGCTTTACAGATGCGCGCTGTGACAGTACTAATGCAACATCAACAACAAAGTACTTCAACATTAACTGAAAACACCCAACAACATGAGTTTATGGAATTAGGGCCTAGGGCTATGGCCACAGTACAAGAGAGAGATGAGGCATCTGATAATACTTCATCAGAAGAAAGAACCCAATCTGGAACACCTTTGAATACTGTCCTGTATCATGATCAGGACAACACCATCCTTGGTCGGGATAGGAAAAGAACAAGCAGAGAAGAGAGCCCTCAATCCGAAAGTTGGGCTCCAAACAAGTTTCCCAAGTTGGTTGCTTCTAAGACTGTTGTTGATCTGCCCACGGATGCTACAATGAGGAAAGCACGCGTCTCAGTCCGAGCCCGATCAGAAGCTCCAATGATAAGCGATGGATGCCAATGGCGTAAATATGGACAAAAAATGGCAAAAGGCAACCCCTGTCCACGAGCTTATTATCGGTGCACCATGGCAGCCGCCTGCCCAGTTCGCAAACAAGTTCAAAGGTGTGCTGAGGATAGAACAATCCTAATAACAACGTACGAAGGGAACCACAATCATCCTCTTCCACCAGCGGCCATGGCCATGGCCTCGACCACATCAGCAGCAGCCAATATGCTACTTTCGGGTTCCATGTCAAGTGCAGATCTTGGACTAATGAACCCTAGCATTAATCTAGCAAGAGCGATTCTTCCACACTCATCTGGCATGGCTACAATCTCAGCTTCGGCCCCATTTCCCACTATCACACTAGACCTCACCCATTCACCAACCCCATTACAGTCCCAAACACCCCCTTTTAACAATTTCCAATTGGGATTCGGAAGCCAAGGCCCATATAACCGGTCCATGTTCTCTGGCCTACAACACTCTCAAAACATGGAAGCGCACCAATCATTTGCTCACAGTAGTAGTCTTGGTGTTGCCACTGCCGCCATCACCGCTGATCCCAACTTCACAGCCGCTCTGGCTGCTGCAATCGCCTCCATAATGGGTGGAGCTCACGCAAATAATAGCAATAGTAATAATAACTGCCAGCAGCAATAG

Network for GWHGAAZE004856

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	275	332	6.70E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.134
	SRR3591706	second leaf	0.133
	SRR3591707	mature leaf	0.065
	SRR3591708	Shoot apex	0.233
	SRR3591709	Stem	0.313
	SRR3591710	White floral bud	0.463
	SRR3591711	White flower	0.666
	SRR3591712	Green floral bud	0.211
	SRR3591713	Yellow flower	0.508
SRP173429	SRR8316895	Juvenile bud stage	0.326
	SRR8316896	Juvenile bud stage	0.385
	SRR8316897	Juvenile bud stage	0.964
	SRR8316894	Third green stage	0.338
	SRR8316900	Third green stage	0.346
	SRR8316901	Third green stage	0.304
	SRR8316898	Complete white stage	0.157
	SRR8316899	Complete white stage	0.870
	SRR8316903	Complete white stage	0.374
	SRR8316902	Silver flowering stage	0.504
	SRR8316904	Silver flowering stage	0.784
	SRR8316905	Silver flowering stage	0.368
	SRR8316906	Gold flowering stage	3.000
	SRR8316907	Gold flowering stage	4.509
	SRR8316908	Gold flowering stage	7.489
SRP132670	SRR6706286	Control	0.362
	SRR6706287	Light intensity 50%	0.886
	SRR6706288	Light intensity 20%	0.480
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.849
	CNS0095593	Slightly white alabastrum(diploid) 2	2.875
	CNS0095594	Slightly white alabastrum(diploid) 3	2.288
	CNS0095595	Whole white alabastrum(diploid) 2	0.669
	CNS0095596	Whole white alabastrum(diploid) 3	0.065
	CNS0095597	Whole white alabastrum(diploid) 4	0.342
	CNS0095598	Silvery flower (diploied) 1	0.259
	CNS0095599	Silvery flower (diploied) 2	0.124
	CNS0095600	Silvery flower (diploied) 3	0.173
	CNS0095601	Golden flower (diploid) 1	0.895
	CNS0095602	Golden flower (diploid) 2	1.020
	CNS0095603	Golden flower (diploid) 3	0.685
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.199
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.250
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.035
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.103
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.046
	CNS0095612	Silvery flower (tetraploid) 3	0.262
	CNS0095613	Golden flower (tetraploid) 1	1.280
	CNS0095614	Golden flower (tetraploid) 2	0.607
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.617
	CRR073298	Stem 2	0.351
	CRR073299	Stem 3	0.059
	CRR073300	Leaf 1	0.647
	CRR073301	Leaf 2	0.726
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.112
	CRR073304	Juvenile bud 2	0.294
	CRR073305	Juvenile bud 3	0.394
	CRR073306	Third green 1	0.328
	CRR073307	Third green 2	0.094
	CRR073308	Third green 3	0.175
	CRR073309	Second white 1	0.240
	CRR073310	Second white 2	1.528
	CRR073311	Second white 3	0.315
	CRR073312	Silver flowering 1	6.463
	CRR073313	Silver flowering 2	3.977
	CRR073314	Silver flowering 3	3.435
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.170
	CRR073317	Gold flowering 3	0.376
	CRR073318	Tawny withering 1	6.121
	CRR073319	Tawny withering 2	23.072
	CRR073320	Tawny withering 3	4.155