Detail information of GWHGAAZE004864


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002264138.10PREDICTED: putative leucine--tRNA ligase, mitochondrial [Vitis vinifera]
Swissprottr|P93736|SYV_ARATH4E-13Valine--tRNA ligase
trEMBLtr|E0CVP1|E0CVP1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI23202.3}
TAIR10AT4G04350.10tRNA synthetase class I (I, L, M and V) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene123466878123476134-
GWHAAZE00000001mRNA123466878123476134-
GWHAAZE00000001exon123475637123476134-
GWHAAZE00000001exon123474191123474335-
GWHAAZE00000001exon123474043123474099-
GWHAAZE00000001exon123473163123473267-
GWHAAZE00000001exon123472817123473040-
GWHAAZE00000001exon123472667123472733-
GWHAAZE00000001exon123472434123472588-
GWHAAZE00000001exon123471945123472209-
GWHAAZE00000001exon123471598123471792-
GWHAAZE00000001exon123471188123471267-
GWHAAZE00000001exon123470110123470172-
GWHAAZE00000001exon123469851123469932-
GWHAAZE00000001exon123469299123469376-
GWHAAZE00000001exon123469109123469210-
GWHAAZE00000001exon123468797123468969-
GWHAAZE00000001exon123468493123468670-
GWHAAZE00000001exon123468192123468269-
GWHAAZE00000001exon123467468123467599-
GWHAAZE00000001exon123466878123467350-
GWHAAZE00000001five_prime_UTR123476032123476134-
GWHAAZE00000001CDS123475637123476031-
GWHAAZE00000001CDS123474191123474335-
GWHAAZE00000001CDS123474043123474099-
GWHAAZE00000001CDS123473163123473267-
GWHAAZE00000001CDS123472817123473040-
GWHAAZE00000001CDS123472667123472733-
GWHAAZE00000001CDS123472434123472588-
GWHAAZE00000001CDS123471945123472209-
GWHAAZE00000001CDS123471598123471792-
GWHAAZE00000001CDS123471188123471267-
GWHAAZE00000001CDS123470110123470172-
GWHAAZE00000001CDS123469851123469932-
GWHAAZE00000001CDS123469299123469376-
GWHAAZE00000001CDS123469109123469210-
GWHAAZE00000001CDS123468797123468969-
GWHAAZE00000001CDS123468493123468670-
GWHAAZE00000001CDS123468192123468269-
GWHAAZE00000001CDS123467468123467599-
GWHAAZE00000001CDS123467108123467350-
GWHAAZE00000001three_prime_UTR123466878123467107-
Transcript Sequence

Network for GWHGAAZE004864

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00133.23tRNA-synt_1981771.90E-12
PF13603.7tRNA-synt_1_22684621.20E-60
PF00133.23tRNA-synt_16927232.00E-06
PF08264.14Anticodon_17798905.70E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01869LARS, leuS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006429biological_processleucyl-tRNA aminoacylation
GO:0002161molecular_functionaminoacyl-tRNA editing activity
GO:0000166molecular_functionnucleotide binding
GO:0004823molecular_functionleucine-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0004812molecular_functionaminoacyl-tRNA ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.486
SRR3591706second leaf31.130
SRR3591707mature leaf22.742
SRR3591708Shoot apex23.216
SRR3591709Stem9.443
SRR3591710White floral bud5.861
SRR3591711White flower5.180
SRR3591712Green floral bud6.083
SRR3591713Yellow flower2.467
SRP173429 SRR8316895Juvenile bud stage 7.067
SRR8316896Juvenile bud stage 7.769
SRR8316897Juvenile bud stage 6.909
SRR8316894Third green stage 3.649
SRR8316900Third green stage 9.562
SRR8316901Third green stage 8.425
SRR8316898Complete white stage 1.534
SRR8316899Complete white stage 6.784
SRR8316903Complete white stage 2.902
SRR8316902Silver flowering stage1.130
SRR8316904Silver flowering stage1.767
SRR8316905Silver flowering stage0.568
SRR8316906Gold flowering stage 2.554
SRR8316907Gold flowering stage 2.002
SRR8316908Gold flowering stage 2.124
SRP132670SRR6706286Control10.019
SRR6706287Light intensity 50%9.512
SRR6706288Light intensity 20%9.832
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.956
CNS0095593Slightly white alabastrum(diploid) 24.107
CNS0095594Slightly white alabastrum(diploid) 35.754
CNS0095595Whole white alabastrum(diploid) 25.267
CNS0095596Whole white alabastrum(diploid) 36.407
CNS0095597Whole white alabastrum(diploid) 46.559
CNS0095598Silvery flower (diploied) 18.549
CNS0095599Silvery flower (diploied) 27.144
CNS0095600Silvery flower (diploied) 33.716
CNS0095601Golden flower (diploid) 17.219
CNS0095602Golden flower (diploid) 24.685
CNS0095603Golden flower (diploid) 34.537
CNS0095604Slightly white alabastrum(tetraploid) 18.117
CNS0095605Slightly white alabastrum(tetraploid) 27.627
CNS0095606Slightly white alabastrum(tetraploid) 310.402
CNS0095607Whole white alabastrum(tetraploid) 16.507
CNS0095608Whole white alabastrum(tetraploid) 25.332
CNS0095609Whole white alabastrum(tetraploid) 39.884
CNS0095610Silvery flower (tetraploid) 15.930
CNS0095611Silvery flower (tetraploid) 25.193
CNS0095612Silvery flower (tetraploid) 34.542
CNS0095613Golden flower (tetraploid) 12.135
CNS0095614Golden flower (tetraploid) 23.578
CNS0095615Golden flower (tetraploid) 32.108
CRA001975CRR073297Stem 19.303
CRR073298Stem 27.700
CRR073299Stem 33.909
CRR073300Leaf 15.948
CRR073301Leaf 26.283
CRR073302Leaf 33.418
CRR073303Juvenile bud 13.338
CRR073304Juvenile bud 21.607
CRR073305Juvenile bud 32.781
CRR073306Third green 10.548
CRR073307Third green 20.294
CRR073308Third green 30.327
CRR073309Second white 10.129
CRR073310Second white 20.606
CRR073311Second white 30.283
CRR073312Silver flowering 10.409
CRR073313Silver flowering 20.634
CRR073314Silver flowering 30.387
CRR073315Gold flowering 18.345
CRR073316Gold flowering 216.297
CRR073317Gold flowering 36.700
CRR073318Tawny withering 13.778
CRR073319Tawny withering 23.115
CRR073320Tawny withering 33.902