Gene detail

Detail information of GWHGAAZE004865

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP04436.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SSE9\|JMJ25_ARATH	Lysine-specific demethylase JMJ25
trEMBL	tr\|A0A068U7E3\|A0A068U7E3_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313\|EMBL:CDP04436.1}
TAIR10	AT1G11950.1	Transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	123487042	123492841	-
GWHAAZE00000001	mRNA	123487042	123492841	-
GWHAAZE00000001	exon	123487042	123487116	-
GWHAAZE00000001	exon	123487272	123487391	-
GWHAAZE00000001	exon	123487498	123487583	-
GWHAAZE00000001	exon	123487771	123487843	-
GWHAAZE00000001	exon	123487956	123488402	-
GWHAAZE00000001	exon	123489051	123489380	-
GWHAAZE00000001	exon	123489875	123490571	-
GWHAAZE00000001	exon	123490665	123490728	-
GWHAAZE00000001	exon	123490816	123490948	-
GWHAAZE00000001	exon	123491048	123491147	-
GWHAAZE00000001	exon	123491281	123491396	-
GWHAAZE00000001	exon	123491510	123492841	-
GWHAAZE00000001	CDS	123491510	123492841	-
GWHAAZE00000001	CDS	123491281	123491396	-
GWHAAZE00000001	CDS	123491048	123491147	-
GWHAAZE00000001	CDS	123490816	123490948	-
GWHAAZE00000001	CDS	123490665	123490728	-
GWHAAZE00000001	CDS	123489875	123490571	-
GWHAAZE00000001	CDS	123489051	123489380	-
GWHAAZE00000001	CDS	123487956	123488402	-
GWHAAZE00000001	CDS	123487771	123487843	-
GWHAAZE00000001	CDS	123487498	123487583	-
GWHAAZE00000001	CDS	123487272	123487391	-
GWHAAZE00000001	CDS	123487042	123487116	-

Transcript Sequence
>GWHTAAZE004871 ATGAAGATGGAAGTACTAATTGCAAAGCAAGATCGGTTGAATCGATATACCAATAATGAATTGCAAATGATCCCTAAAAACCCAGCTAGATTTCCTCTGCTTACAAGAAAAAGAAAAGTTCGAGAGCCGGTGAATATTGACGAGGATGAAGGACATTGCAATTTGGGGTCATCACCAAAAACAGCGAAGGTTCCAATCAGGAAACCAATTCTGAATGGAAAAATCAAATATCCCCATGGTATAAGCACATCAAGTCGTACAAGCACATCAGGAAGCTGCTGCTTTGCCTCAAACAAGAAAAGTACCTGTAAGCCTGAACGCCATTTAGGTGAGTCTGATGATGATTACGAAGAAGAGGAGGACGAGGAAGATGTGAACAGTGAGGGCTCATCACCACCACGAGCAAAAGCTTCAAATAAGAAAACGAGGGTAACTCAAAGAACTAGAGATTCACATTGTAACAGTACCTCTGGCAAGTGTCAATTGCCCTTGAAGGAAAGAACTCTCAAGGAGATACCTTCTTGGAGAGAATCAGACGAGGAAGAGTACAATATGGGGTCATGGAAAAGAGCAACTTCTTCAAATAAACAGGGAAGGATGATTCAAGATATCAAAGGTCAGCATGGTGCAAGAAAGTCAGTGAAGAGTGGGGATGGTGCTTCAAACAAGGAAAAAGTTCGAAAGAGGGAATGTTGTTCTTCATTGGATGAATGGGATGATGAAGATGACAAAGAGCATGAGGAGAGTGAAGACAGAACTAAAAACGAGAACCCTTGTGGAAAAAGAATATCAGAAAGACGCCGTACTTCCTCAGACAAGAGAAGAATAGTTGACGGTGATTTTTATTTTGGTGAATGGATAGACGAGGAAGAAGAGGAGTCCTTGCCTTCCATGGAGGCGATGAAGGGAATTACTGATTCAAATGATGTTAAGATGAAAAGAAGGTTCAAGCATACTGGAGAGAAAATTGGTGAACAGATAGATGATGAAAAAGTTATGGCTTTGCCGTTGAGGGAGAGGAGAAAAGGAAGTACTATTTCAAGTGATGTTAATGTAACTAGGTTGAAGCGAACAAAAGAGAAAATTGGTGAAAGGATAGAAGATGAAAAAGGTATGTTTTCACCATTGATGAAGACCAGGAAAGGAAGTACTGATTCAAATAGTGTTAAGATCAAAAGAAGGTTGAAGCACACAAGAGAGAGAGAAAATGAGTTTGGGAAGCCATCTTTGTGTAATTCATCTTCTTCATTCTCTCACAATTCTTCTTTTTTGGTTTCAATTTCTAAAAGTGATGGGAATAGCACTGACAAAAGTATAAATAAGAATGCAAAGGAGCCTAGAGAAGAGTGCTTGAAGTGTCACCAGTGTAGAAGAAACGAGAGAAAAATTGTCGTACCTTGTACCAAGTGCAAGGAAAAACTATATTGTATCCAGTGTATCAAACAGTGGTATCCTCAATTTTCTGAGGAAGATATAGCAAAGATATGCCCATTTTGCCGGGGGAATTGCAATTGCAACCTGTGCTTGCACTCAAGTGCCATGTCTAAGATGCCAAAGAGAGATCTCACTGATCTTCAAAAGGCACAGCATCTTGAGTATTTGGTCAACTCTCTTCTTCCGTTTCTGAAACAAATTCATGAAGAACAATCTGAGGAGATAGTGATGGAGTCTGTTATTAAAGGAATATTATCATCTTCTATTGAAATAGAACAATCCCTTTGTTACAATGATGAGCGCATCTATTGCAACCATTGCGCGACATCTATTATTGATCTTCATCGAAGTTGTCCAAACTGCTCATATGAGCTCTGTCTTAGCTGTTGTCGAGAGATACGCAGGGGTTACTTCTTAGGGAGCCAGAAAAAAGTAGTTTGTCGATATATTGATAAAGGATATGATTACATGCACGGTGGAGAACCGCTACCTGAATGTTGCGATATGGATACTTCAGTGGATGTGCTTGAGCCTCCAATTAAGTGGGTTGCTAAGGATGATGGTACTATCACTTGTGCTCCAAGCGAAATGGGTGGATGTGGTAATTGTGTGCTGGAGCTAAAGTGTATTCTTCAAAAAGACTGGATATCAAATTTGGAAACTAGGGCAGAAAAAATAATCGACAAATTTGGAACTATTTTGTCTAGGCCAGTTTGTTCTCAATATGGTGGTGAGATGTTACGAAGATCAGCTTCAAGATTCGGTACTGATGACAACTGCTTGTACTGTCCAGCTTCGTTAGACATGCTGAAGGAAGAGGAGATCTTGCGGTTTCGTAGCCACTGGGCTAAAGGAGAACCAGTGATTGTCCGGAATGTTCTAGAACGGACTACTGGTTTAAGCTGGGAGCCAATGGTTATGTGGCGGGCATTATGCGAGAACCAGGATTCAAAGATCAGTTCAAATATGTCTGAAGTGAAGGCTATTGATTGCCTGGCTAATTGTGAGGTAGAGATAAATACCCGTCAATTTTTCAAAGGTTATATAGAGGGAAGAGCATACGATAATTTCTGGCCTGAGATGCTGAAGCTGAAGGATTGGCCCCCATCGGATAAGTTTGAGGATCTCTTACCACGCCACTGTGACGAGTTTATCAGTGCATTGCCATTGCCAGAATACACAGATCCTAGGAATGGTTTTCTAAATCTTGCAGTGAAGTTGCCTCCGAGTGTTCTAAAACCTGATTTGGGCCCAAAGACGTATATTGCATATGGCACTGCCGAAGAACTTGGACGTGGAGATTCTGTTACTAAGCTTCATTGTGATATGTCAGATGCGGTAAATATTTTGACACACACTGCAGAAATTGTGGTAAGTGATGAGCAACACTCTGCAATCAAAACCTTAAAAAAGAAACACCGAGCTCAAGATGAAAGAGAACTTGGCCATCCAGATATGGTTAAAAATCTAACTAGAATATGTAACGGACTTGATGATGAGGAAATGGATTCCATTCTTTATGATAATAAACAACTCAGGAATGAAATATATAATACAGCTAGAATATGTAGGGCGGCGGTGCCCAATCGGATAGCAGGAAGAAATTCAATAGCTGAGCATGGAGAAGGATTAACCTTTCCCGGTTTTCCAAAAGAGGAGGAAAAAGAGGAAACAGGCAGTGCACTTTGGGACATATTTAGGAGGGCAGATGTGCCCAAATTAAAAGAATATCTTGTGAAGCACAAGAAAGAGTTCAGGCACTCTTATTGTTGTCGCATTGATCAGGTTGTTCATCCAATTCATGACCAAACATTTTACTTGACTATGGAGCATAAAAGAAAGCTTAAGGAGGAATATGGAATAGAACCTTGGACTTTTGAGCAGAGACTTGGAGAGGCAGTGTTTATTCCTGCTGGATGCCCTCATCAAGTGAGAAATCTCAAGTCATGCACAAAGGTCGCTGTGGACTTTGTATCTCCTGAAAATGTCCACGAATGCATTCAGCTAACTGAGGAATTTCGGAAGCTTCCAAAGGACCACAAGGCTAGAGAAGACAAACTAGAGATCAAGAAGATGATACTTCATGCGATTAACCAAGCTGTTGATGATTTTGAAGCTCTGGCGTCTACCTGGCAATGA

Network for GWHGAAZE004865

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10497.10	zf-4CXXC_R1	450	514	1.70E-05
PF02373.23	JmjC	1027	1135	2.00E-16

Protein Sequence

>GWHPAAZE004868
MKMEVLIAKQDRLNRYTNNELQMIPKNPARFPLLTRKRKVREPVNIDEDEGHCNLGSSPKTAKVPIRKPILNGKIKYPHGISTSSRTSTSGSCCFASNKKSTCKPERHLGESDDDYEEEEDEEDVNSEGSSPPRAKASNKKTRVTQRTRDSHCNSTSGKCQLPLKERTLKEIPSWRESDEEEYNMGSWKRATSSNKQGRMIQDIKGQHGARKSVKSGDGASNKEKVRKRECCSSLDEWDDEDDKEHEESEDRTKNENPCGKRISERRRTSSDKRRIVDGDFYFGEWIDEEEEESLPSMEAMKGITDSNDVKMKRRFKHTGEKIGEQIDDEKVMALPLRERRKGSTISSDVNVTRLKRTKEKIGERIEDEKGMFSPLMKTRKGSTDSNSVKIKRRLKHTRERENEFGKPSLCNSSSSFSHNSSFLVSISKSDGNSTDKSINKNAKEPREECLKCHQCRRNERKIVVPCTKCKEKLYCIQCIKQWYPQFSEEDIAKICPFCRGNCNCNLCLHSSAMSKMPKRDLTDLQKAQHLEYLVNSLLPFLKQIHEEQSEEIVMESVIKGILSSSIEIEQSLCYNDERIYCNHCATSIIDLHRSCPNCSYELCLSCCREIRRGYFLGSQKKVVCRYIDKGYDYMHGGEPLPECCDMDTSVDVLEPPIKWVAKDDGTITCAPSEMGGCGNCVLELKCILQKDWISNLETRAEKIIDKFGTILSRPVCSQYGGEMLRRSASRFGTDDNCLYCPASLDMLKEEEILRFRSHWAKGEPVIVRNVLERTTGLSWEPMVMWRALCENQDSKISSNMSEVKAIDCLANCEVEINTRQFFKGYIEGRAYDNFWPEMLKLKDWPPSDKFEDLLPRHCDEFISALPLPEYTDPRNGFLNLAVKLPPSVLKPDLGPKTYIAYGTAEELGRGDSVTKLHCDMSDAVNILTHTAEIVVSDEQHSAIKTLKKKHRAQDERELGHPDMVKNLTRICNGLDDEEMDSILYDNKQLRNEIYNTARICRAAVPNRIAGRNSIAEHGEGLTFPGFPKEEEKEETGSALWDIFRRADVPKLKEYLVKHKKEFRHSYCCRIDQVVHPIHDQTFYLTMEHKRKLKEEYGIEPWTFEQRLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVHECIQLTEEFRKLPKDHKAREDKLEIKKMILHAINQAVDDFEALASTWQ

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
K15601	KDM3	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.384
	SRR3591706	second leaf	13.638
	SRR3591707	mature leaf	14.498
	SRR3591708	Shoot apex	13.786
	SRR3591709	Stem	21.917
	SRR3591710	White floral bud	20.214
	SRR3591711	White flower	20.097
	SRR3591712	Green floral bud	26.708
	SRR3591713	Yellow flower	7.904
SRP173429	SRR8316895	Juvenile bud stage	21.755
	SRR8316896	Juvenile bud stage	31.134
	SRR8316897	Juvenile bud stage	12.615
	SRR8316894	Third green stage	10.194
	SRR8316900	Third green stage	21.266
	SRR8316901	Third green stage	22.755
	SRR8316898	Complete white stage	5.347
	SRR8316899	Complete white stage	20.199
	SRR8316903	Complete white stage	16.013
	SRR8316902	Silver flowering stage	6.141
	SRR8316904	Silver flowering stage	10.170
	SRR8316905	Silver flowering stage	4.432
	SRR8316906	Gold flowering stage	12.366
	SRR8316907	Gold flowering stage	13.663
	SRR8316908	Gold flowering stage	12.947
SRP132670	SRR6706286	Control	15.047
	SRR6706287	Light intensity 50%	16.348
	SRR6706288	Light intensity 20%	15.765
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.090
	CNS0095593	Slightly white alabastrum(diploid) 2	16.205
	CNS0095594	Slightly white alabastrum(diploid) 3	17.483
	CNS0095595	Whole white alabastrum(diploid) 2	14.152
	CNS0095596	Whole white alabastrum(diploid) 3	11.793
	CNS0095597	Whole white alabastrum(diploid) 4	13.136
	CNS0095598	Silvery flower (diploied) 1	16.036
	CNS0095599	Silvery flower (diploied) 2	17.567
	CNS0095600	Silvery flower (diploied) 3	13.513
	CNS0095601	Golden flower (diploid) 1	13.415
	CNS0095602	Golden flower (diploid) 2	13.066
	CNS0095603	Golden flower (diploid) 3	12.405
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.695
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.374
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.691
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.355
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.729
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.388
	CNS0095610	Silvery flower (tetraploid) 1	13.904
	CNS0095611	Silvery flower (tetraploid) 2	12.433
	CNS0095612	Silvery flower (tetraploid) 3	11.466
	CNS0095613	Golden flower (tetraploid) 1	5.933
	CNS0095614	Golden flower (tetraploid) 2	9.736
	CNS0095615	Golden flower (tetraploid) 3	5.579
CRA001975	CRR073297	Stem 1	18.320
	CRR073298	Stem 2	16.144
	CRR073299	Stem 3	6.967
	CRR073300	Leaf 1	16.906
	CRR073301	Leaf 2	16.596
	CRR073302	Leaf 3	7.089
	CRR073303	Juvenile bud 1	9.110
	CRR073304	Juvenile bud 2	4.937
	CRR073305	Juvenile bud 3	6.904
	CRR073306	Third green 1	2.202
	CRR073307	Third green 2	1.782
	CRR073308	Third green 3	2.535
	CRR073309	Second white 1	1.187
	CRR073310	Second white 2	1.894
	CRR073311	Second white 3	0.988
	CRR073312	Silver flowering 1	0.396
	CRR073313	Silver flowering 2	0.467
	CRR073314	Silver flowering 3	0.841
	CRR073315	Gold flowering 1	4.467
	CRR073316	Gold flowering 2	9.697
	CRR073317	Gold flowering 3	1.432
	CRR073318	Tawny withering 1	10.540
	CRR073319	Tawny withering 2	10.692
	CRR073320	Tawny withering 3	8.930