Gene detail

Detail information of GWHGAAZE004893

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011073487.1	PREDICTED: phosphatidate cytidylyltransferase [Sesamum indicum]
Swissprot	tr\|O04940\|CDS1_SOLTU	Phosphatidate cytidylyltransferase
trEMBL	tr\|A0A067JMG2\|A0A067JMG2_JATCU	Phosphatidate cytidylyltransferase {ECO:0000256\|RuleBase:RU003938}
TAIR10	AT4G22340.3	cytidinediphosphate diacylglycerol synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	123899568	123904981	-
GWHAAZE00000001	mRNA	123899568	123904981	-
GWHAAZE00000001	exon	123904919	123904981	-
GWHAAZE00000001	exon	123904356	123904609	-
GWHAAZE00000001	exon	123904000	123904151	-
GWHAAZE00000001	exon	123903224	123903365	-
GWHAAZE00000001	exon	123902769	123902925	-
GWHAAZE00000001	exon	123902300	123902347	-
GWHAAZE00000001	exon	123902120	123902206	-
GWHAAZE00000001	exon	123900757	123900885	-
GWHAAZE00000001	exon	123900594	123900650	-
GWHAAZE00000001	exon	123899790	123899873	-
GWHAAZE00000001	exon	123899568	123899660	-
GWHAAZE00000001	CDS	123904919	123904981	-
GWHAAZE00000001	CDS	123904356	123904609	-
GWHAAZE00000001	CDS	123904000	123904151	-
GWHAAZE00000001	CDS	123903224	123903365	-
GWHAAZE00000001	CDS	123902769	123902925	-
GWHAAZE00000001	CDS	123902300	123902347	-
GWHAAZE00000001	CDS	123902120	123902206	-
GWHAAZE00000001	CDS	123900757	123900885	-
GWHAAZE00000001	CDS	123900594	123900650	-
GWHAAZE00000001	CDS	123899790	123899873	-
GWHAAZE00000001	CDS	123899568	123899660	-

Transcript Sequence
>GWHTAAZE004899 ATGCAAAAGGATAGTGGTAGCGGTGCAACTGGACGTCTTCGGCGCCGTAAAGGCTCGAATGAGGTTCCTCCAGAGGTTGGTAAAGCAAATGGAAGCCATTTACTTGTTAACGATCAAAATAAATATAGATCAATGTGGATCCGTGCATATTCATCTATTTGGATGATTGGCGGCTTTGCCTTCATAATCTACATGGGCCATCTCTATATTTGGGCTATGGTGGTGGTAATCCAAATCTTTATGGCTAGTGAGCTGTTCAGTCTACTTAGAAAAACGCATGAAGACAGGCACCTCCCAGGATTTAGGCATTTAAATTGGCACTTTTTCTTCACTGCGATGCTGTTTGTATATGGCCGTATTCTCAGTCAAAGACTCGTCAATACAGTTACTTCAGACAAGTTTCTATATCAAGTTGTGGGCAGACTTATCAAGTATCACATGGCTGCCTGTTATTTCTTGTATATTGCAGGTTTTGTTTGGTTCATTCTCTCGCTAAAGAAGAAGTTGTACAAGTATCAATTTGGCCAATATGCATGGACACATATGATTCTGATTGTGGTATTTACACAGTCGTCTTTCACTGTAGCCAACATTTTTGAAGGAATTTTCTGGTTCCTTCTTCCAGCATCACTTATTGTTATCAATGATATTGCTGCTTATATCTTCGGGTTCTTCTTTGGAAAAACCCCTTTGATAAAGTTATCCCCGAAGAAAACATGGGAGGGTTTCATCGGAGCATCTGTTACAACTATTATCTCTGCATTTGTGCTTGCTAATATTTTGGGTCGTTTCCCGTGGTTAACATGTCCTAGAAAGGATTTATCAACTGGTTGGCTTAATTGTGATCCCGGTCCATTATTTAAGCCAGAGAATTTCACTTTACCTGAATGGATTCCAGATTGGTTTTCCTGGAAAGAGATCCAAGTTTTGCCTGTACAATGGCATGCATTGTGTCTGGGTCTTTTTGCATCAATTATTGCCCCCTTCGGAGGCTTTTTTGCTAGTGGCTTTAAAAGAGCTTTCAAGATAAAGGATTTTGGTGACAGTATTCCTGGCCATGGTGGAATGACAGACAGAATGGATTGCCAGATGGTAATGGCGGTGTTTGCATACATCTATCATCAATCATTCGTAACGCCTCAAAGTGTATCTGTTGAGATGATATTGGAGCAGATATTGATGAACCTGAGTTTTGAGGAGCAGCGAGCTCTCTATATAAAGCTTGCGCAGATCATCAAGGAGACCAGCCAGTTTGGAGAATCTTGA

Network for GWHGAAZE004893

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01148.21	CTP_transf_1	47	377	8.00E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00981	E2.7.7.41, CDS1, CDS2, cdsA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Phosphatidylinositol signaling system	map04070

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0016772	molecular_function	transferase activity, transferring phosphorus-containing groups
GO:0004605	molecular_function	phosphatidate cytidylyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.760
	SRR3591706	second leaf	20.122
	SRR3591707	mature leaf	17.430
	SRR3591708	Shoot apex	33.212
	SRR3591709	Stem	23.961
	SRR3591710	White floral bud	14.741
	SRR3591711	White flower	21.049
	SRR3591712	Green floral bud	30.954
	SRR3591713	Yellow flower	15.213
SRP173429	SRR8316895	Juvenile bud stage	18.671
	SRR8316896	Juvenile bud stage	29.446
	SRR8316897	Juvenile bud stage	13.587
	SRR8316894	Third green stage	13.237
	SRR8316900	Third green stage	34.892
	SRR8316901	Third green stage	36.021
	SRR8316898	Complete white stage	9.883
	SRR8316899	Complete white stage	46.275
	SRR8316903	Complete white stage	21.307
	SRR8316902	Silver flowering stage	14.447
	SRR8316904	Silver flowering stage	20.492
	SRR8316905	Silver flowering stage	8.844
	SRR8316906	Gold flowering stage	33.251
	SRR8316907	Gold flowering stage	32.203
	SRR8316908	Gold flowering stage	35.175
SRP132670	SRR6706286	Control	9.052
	SRR6706287	Light intensity 50%	9.345
	SRR6706288	Light intensity 20%	10.025
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.972
	CNS0095593	Slightly white alabastrum(diploid) 2	27.195
	CNS0095594	Slightly white alabastrum(diploid) 3	21.020
	CNS0095595	Whole white alabastrum(diploid) 2	21.531
	CNS0095596	Whole white alabastrum(diploid) 3	24.531
	CNS0095597	Whole white alabastrum(diploid) 4	17.278
	CNS0095598	Silvery flower (diploied) 1	22.512
	CNS0095599	Silvery flower (diploied) 2	27.270
	CNS0095600	Silvery flower (diploied) 3	36.731
	CNS0095601	Golden flower (diploid) 1	20.755
	CNS0095602	Golden flower (diploid) 2	30.839
	CNS0095603	Golden flower (diploid) 3	29.181
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.444
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.064
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.090
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.571
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.312
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.065
	CNS0095610	Silvery flower (tetraploid) 1	31.917
	CNS0095611	Silvery flower (tetraploid) 2	34.254
	CNS0095612	Silvery flower (tetraploid) 3	26.649
	CNS0095613	Golden flower (tetraploid) 1	16.000
	CNS0095614	Golden flower (tetraploid) 2	25.507
	CNS0095615	Golden flower (tetraploid) 3	27.130
CRA001975	CRR073297	Stem 1	16.803
	CRR073298	Stem 2	14.388
	CRR073299	Stem 3	11.113
	CRR073300	Leaf 1	18.240
	CRR073301	Leaf 2	15.392
	CRR073302	Leaf 3	12.569
	CRR073303	Juvenile bud 1	17.005
	CRR073304	Juvenile bud 2	13.490
	CRR073305	Juvenile bud 3	18.708
	CRR073306	Third green 1	4.184
	CRR073307	Third green 2	3.534
	CRR073308	Third green 3	3.183
	CRR073309	Second white 1	12.830
	CRR073310	Second white 2	9.093
	CRR073311	Second white 3	8.992
	CRR073312	Silver flowering 1	7.317
	CRR073313	Silver flowering 2	5.600
	CRR073314	Silver flowering 3	7.565
	CRR073315	Gold flowering 1	8.585
	CRR073316	Gold flowering 2	16.475
	CRR073317	Gold flowering 3	11.358
	CRR073318	Tawny withering 1	17.973
	CRR073319	Tawny withering 2	20.532
	CRR073320	Tawny withering 3	12.726