Detail information of GWHGAAZE004898


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278125.17.392E-117PREDICTED: uncharacterized protein LOC100267408 [Vitis vinifera]
Swissprottr|Q9SIV5|C3H19_ARATH0.0000001Zinc finger CCCH domain-containing protein 19
trEMBLtr|D7TRI3|D7TRI3_VITVI3E-117Putative uncharacterized protein {ECO:0000313|EMBL:CBI33108.3}
TAIR10AT4G22360.16E-76SWIB complex BAF60b domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene124026308124029230+
GWHAAZE00000001mRNA124026308124029230+
GWHAAZE00000001exon124026308124026420+
GWHAAZE00000001exon124027999124028110+
GWHAAZE00000001exon124028205124028376+
GWHAAZE00000001exon124028469124028656+
GWHAAZE00000001exon124029108124029230+
GWHAAZE00000001CDS124026308124026420+
GWHAAZE00000001CDS124027999124028110+
GWHAAZE00000001CDS124028205124028376+
GWHAAZE00000001CDS124028469124028656+
GWHAAZE00000001CDS124029108124029230+
Transcript Sequence

Network for GWHGAAZE004898

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08766.12DEK_C2448.10E-06
PF02201.19SWIB561268.90E-28
PF02201.19SWIB1582301.80E-19
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.152
SRR3591706second leaf38.202
SRR3591707mature leaf30.947
SRR3591708Shoot apex62.901
SRR3591709Stem42.547
SRR3591710White floral bud38.129
SRR3591711White flower39.765
SRR3591712Green floral bud38.395
SRR3591713Yellow flower37.540
SRP173429 SRR8316895Juvenile bud stage 18.659
SRR8316896Juvenile bud stage 33.421
SRR8316897Juvenile bud stage 14.313
SRR8316894Third green stage 14.351
SRR8316900Third green stage 31.625
SRR8316901Third green stage 33.525
SRR8316898Complete white stage 13.534
SRR8316899Complete white stage 41.807
SRR8316903Complete white stage 25.351
SRR8316902Silver flowering stage12.141
SRR8316904Silver flowering stage17.744
SRR8316905Silver flowering stage10.531
SRR8316906Gold flowering stage 22.529
SRR8316907Gold flowering stage 27.375
SRR8316908Gold flowering stage 32.758
SRP132670SRR6706286Control18.698
SRR6706287Light intensity 50%21.177
SRR6706288Light intensity 20%19.677
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.290
CNS0095593Slightly white alabastrum(diploid) 217.867
CNS0095594Slightly white alabastrum(diploid) 319.587
CNS0095595Whole white alabastrum(diploid) 214.932
CNS0095596Whole white alabastrum(diploid) 316.585
CNS0095597Whole white alabastrum(diploid) 417.001
CNS0095598Silvery flower (diploied) 117.541
CNS0095599Silvery flower (diploied) 216.888
CNS0095600Silvery flower (diploied) 320.230
CNS0095601Golden flower (diploid) 118.563
CNS0095602Golden flower (diploid) 228.080
CNS0095603Golden flower (diploid) 323.705
CNS0095604Slightly white alabastrum(tetraploid) 126.563
CNS0095605Slightly white alabastrum(tetraploid) 224.380
CNS0095606Slightly white alabastrum(tetraploid) 338.909
CNS0095607Whole white alabastrum(tetraploid) 115.971
CNS0095608Whole white alabastrum(tetraploid) 213.776
CNS0095609Whole white alabastrum(tetraploid) 327.106
CNS0095610Silvery flower (tetraploid) 118.596
CNS0095611Silvery flower (tetraploid) 217.109
CNS0095612Silvery flower (tetraploid) 313.091
CNS0095613Golden flower (tetraploid) 113.463
CNS0095614Golden flower (tetraploid) 220.164
CNS0095615Golden flower (tetraploid) 321.615
CRA001975CRR073297Stem 135.351
CRR073298Stem 234.234
CRR073299Stem 337.418
CRR073300Leaf 128.321
CRR073301Leaf 226.445
CRR073302Leaf 324.639
CRR073303Juvenile bud 120.423
CRR073304Juvenile bud 222.487
CRR073305Juvenile bud 331.730
CRR073306Third green 19.312
CRR073307Third green 211.553
CRR073308Third green 38.937
CRR073309Second white 16.578
CRR073310Second white 29.921
CRR073311Second white 311.260
CRR073312Silver flowering 111.973
CRR073313Silver flowering 210.992
CRR073314Silver flowering 310.935
CRR073315Gold flowering 111.960
CRR073316Gold flowering 215.222
CRR073317Gold flowering 310.214
CRR073318Tawny withering 130.211
CRR073319Tawny withering 221.398
CRR073320Tawny withering 332.123