Detail information of GWHGAAZE004900


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN72890.19.18304E-48hypothetical protein VITISV_022310 [Vitis vinifera]
Swissprottr|Q9SU29|UPL5_ARATH3E-33E3 ubiquitin-protein ligase UPL5
trEMBLtr|M1AFQ8|M1AFQ8_SOLTU3E-48Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400021801}
TAIR10AT4G12570.15E-29ubiquitin protein ligase 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene124044253124044504-
GWHAAZE00000001mRNA124044253124044504-
GWHAAZE00000001exon124044253124044504-
GWHAAZE00000001CDS124044253124044504-
Transcript Sequence

Network for GWHGAAZE004900

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0021


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00632.26HECT1752.40E-19
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyHECT

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0004842molecular_functionubiquitin-protein transferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.376
SRR3591706second leaf17.910
SRR3591707mature leaf27.382
SRR3591708Shoot apex29.836
SRR3591709Stem44.148
SRR3591710White floral bud28.304
SRR3591711White flower47.078
SRR3591712Green floral bud36.486
SRR3591713Yellow flower26.391
SRP173429 SRR8316895Juvenile bud stage 22.637
SRR8316896Juvenile bud stage 25.140
SRR8316897Juvenile bud stage 11.625
SRR8316894Third green stage 10.026
SRR8316900Third green stage 27.789
SRR8316901Third green stage 32.527
SRR8316898Complete white stage 13.689
SRR8316899Complete white stage 49.830
SRR8316903Complete white stage 26.890
SRR8316902Silver flowering stage16.986
SRR8316904Silver flowering stage18.799
SRR8316905Silver flowering stage11.037
SRR8316906Gold flowering stage 31.769
SRR8316907Gold flowering stage 35.418
SRR8316908Gold flowering stage 30.185
SRP132670SRR6706286Control7.676
SRR6706287Light intensity 50%8.491
SRR6706288Light intensity 20%11.376
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.869
CNS0095593Slightly white alabastrum(diploid) 249.845
CNS0095594Slightly white alabastrum(diploid) 348.783
CNS0095595Whole white alabastrum(diploid) 237.927
CNS0095596Whole white alabastrum(diploid) 333.981
CNS0095597Whole white alabastrum(diploid) 440.653
CNS0095598Silvery flower (diploied) 145.451
CNS0095599Silvery flower (diploied) 242.131
CNS0095600Silvery flower (diploied) 341.374
CNS0095601Golden flower (diploid) 155.516
CNS0095602Golden flower (diploid) 234.743
CNS0095603Golden flower (diploid) 337.470
CNS0095604Slightly white alabastrum(tetraploid) 144.215
CNS0095605Slightly white alabastrum(tetraploid) 240.237
CNS0095606Slightly white alabastrum(tetraploid) 340.508
CNS0095607Whole white alabastrum(tetraploid) 132.604
CNS0095608Whole white alabastrum(tetraploid) 232.009
CNS0095609Whole white alabastrum(tetraploid) 336.516
CNS0095610Silvery flower (tetraploid) 153.736
CNS0095611Silvery flower (tetraploid) 245.420
CNS0095612Silvery flower (tetraploid) 339.293
CNS0095613Golden flower (tetraploid) 141.790
CNS0095614Golden flower (tetraploid) 243.602
CNS0095615Golden flower (tetraploid) 336.008
CRA001975CRR073297Stem 121.871
CRR073298Stem 221.328
CRR073299Stem 318.071
CRR073300Leaf 124.072
CRR073301Leaf 232.156
CRR073302Leaf 319.105
CRR073303Juvenile bud 116.909
CRR073304Juvenile bud 214.834
CRR073305Juvenile bud 323.889
CRR073306Third green 113.535
CRR073307Third green 29.198
CRR073308Third green 312.184
CRR073309Second white 116.509
CRR073310Second white 222.475
CRR073311Second white 316.868
CRR073312Silver flowering 111.781
CRR073313Silver flowering 29.670
CRR073314Silver flowering 37.414
CRR073315Gold flowering 113.821
CRR073316Gold flowering 213.835
CRR073317Gold flowering 39.645
CRR073318Tawny withering 125.588
CRR073319Tawny withering 220.134
CRR073320Tawny withering 322.683