Detail information of GWHGAAZE004901


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002272059.10PREDICTED: E3 ubiquitin-protein ligase UPL5 [Vitis vinifera]
Swissprottr|Q9SU29|UPL5_ARATH0E3 ubiquitin-protein ligase UPL5
trEMBLtr|A0A067JU50|A0A067JU50_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP27496.1}
TAIR10AT4G12570.10ubiquitin protein ligase 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene124046372124053474-
GWHAAZE00000001mRNA124046372124053474-
GWHAAZE00000001exon124051461124053474-
GWHAAZE00000001exon124046372124046997-
GWHAAZE00000001CDS124051461124053474-
GWHAAZE00000001CDS124046372124046997-
Transcript Sequence

Network for GWHGAAZE004901

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00240.24ubiquitin1612321.90E-14
PF00632.26HECT6448721.20E-47
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyHECT

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0004842molecular_functionubiquitin-protein transferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.121
SRR3591706second leaf18.931
SRR3591707mature leaf21.890
SRR3591708Shoot apex17.605
SRR3591709Stem33.657
SRR3591710White floral bud27.604
SRR3591711White flower32.719
SRR3591712Green floral bud24.406
SRR3591713Yellow flower27.023
SRP173429 SRR8316895Juvenile bud stage 13.117
SRR8316896Juvenile bud stage 17.447
SRR8316897Juvenile bud stage 9.391
SRR8316894Third green stage 7.610
SRR8316900Third green stage 18.973
SRR8316901Third green stage 17.506
SRR8316898Complete white stage 10.481
SRR8316899Complete white stage 29.943
SRR8316903Complete white stage 21.102
SRR8316902Silver flowering stage11.308
SRR8316904Silver flowering stage18.479
SRR8316905Silver flowering stage9.624
SRR8316906Gold flowering stage 24.028
SRR8316907Gold flowering stage 23.374
SRR8316908Gold flowering stage 27.127
SRP132670SRR6706286Control22.450
SRR6706287Light intensity 50%23.276
SRR6706288Light intensity 20%23.308
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.391
CNS0095593Slightly white alabastrum(diploid) 28.046
CNS0095594Slightly white alabastrum(diploid) 37.767
CNS0095595Whole white alabastrum(diploid) 28.146
CNS0095596Whole white alabastrum(diploid) 37.003
CNS0095597Whole white alabastrum(diploid) 48.512
CNS0095598Silvery flower (diploied) 114.875
CNS0095599Silvery flower (diploied) 210.699
CNS0095600Silvery flower (diploied) 334.726
CNS0095601Golden flower (diploid) 111.621
CNS0095602Golden flower (diploid) 232.053
CNS0095603Golden flower (diploid) 330.193
CNS0095604Slightly white alabastrum(tetraploid) 113.038
CNS0095605Slightly white alabastrum(tetraploid) 29.764
CNS0095606Slightly white alabastrum(tetraploid) 328.497
CNS0095607Whole white alabastrum(tetraploid) 19.395
CNS0095608Whole white alabastrum(tetraploid) 27.556
CNS0095609Whole white alabastrum(tetraploid) 318.549
CNS0095610Silvery flower (tetraploid) 133.801
CNS0095611Silvery flower (tetraploid) 240.802
CNS0095612Silvery flower (tetraploid) 330.780
CNS0095613Golden flower (tetraploid) 112.655
CNS0095614Golden flower (tetraploid) 229.930
CNS0095615Golden flower (tetraploid) 329.584
CRA001975CRR073297Stem 120.202
CRR073298Stem 218.621
CRR073299Stem 318.059
CRR073300Leaf 121.464
CRR073301Leaf 216.223
CRR073302Leaf 317.652
CRR073303Juvenile bud 115.764
CRR073304Juvenile bud 214.984
CRR073305Juvenile bud 321.300
CRR073306Third green 111.756
CRR073307Third green 29.940
CRR073308Third green 312.980
CRR073309Second white 113.766
CRR073310Second white 218.387
CRR073311Second white 317.566
CRR073312Silver flowering 114.221
CRR073313Silver flowering 213.778
CRR073314Silver flowering 310.954
CRR073315Gold flowering 18.030
CRR073316Gold flowering 213.653
CRR073317Gold flowering 311.508
CRR073318Tawny withering 112.401
CRR073319Tawny withering 29.140
CRR073320Tawny withering 311.480