Gene detail

Detail information of GWHGAAZE004904

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAV49506.1	1.3015E-111	L-galactose-1-phosphate phosphatase [Actinidia deliciosa]
Swissprot	tr\|P54928\|IMP3_SOLLC	1E-104	Inositol monophosphatase 3
trEMBL	tr\|Q5U789\|Q5U789_ACTDE	5E-112	L-galactose-1-phosphate phosphatase {ECO:0000313\|EMBL:AAV49506.1}
TAIR10	AT3G02870.1	1E-76	Inositol monophosphatase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	124127600	124129835	+
GWHAAZE00000001	mRNA	124127600	124129835	+
GWHAAZE00000001	exon	124127600	124127704	+
GWHAAZE00000001	exon	124127797	124127900	+
GWHAAZE00000001	exon	124128004	124128088	+
GWHAAZE00000001	exon	124128331	124128385	+
GWHAAZE00000001	exon	124128473	124128516	+
GWHAAZE00000001	exon	124129597	124129697	+
GWHAAZE00000001	exon	124129775	124129835	+
GWHAAZE00000001	CDS	124127600	124127704	+
GWHAAZE00000001	CDS	124127797	124127900	+
GWHAAZE00000001	CDS	124128004	124128088	+
GWHAAZE00000001	CDS	124128331	124128385	+
GWHAAZE00000001	CDS	124128473	124128516	+
GWHAAZE00000001	CDS	124129597	124129697	+
GWHAAZE00000001	CDS	124129775	124129835	+

Transcript Sequence
>GWHTAAZE004910 ATGCTTTCTTTGTTCCCAATGCAGGTGGATTTAGTCACTGAAACGGACAAAGCATGTGAAGAGCTCATATTCAATCATCTCAAGCAACATCTCCCTAATCACAAGTTCATTGGTGAAGAAACTACTGCTGCTTGTGGTGCAACAGAGTTGACAGATGAACCGACATGGATAGTAGATCCTCTAGATGGGACAACTAACTTTGTGCATGGGTTTCCCTTTGTGTGTGTTTCTATTGGTCTTACAATTGGAAAGGTCCCGACTGTTGGTGTTGTTTACAACCCAATTATGGACGAGCTTTTTACTGGCGTACATGGAAAAGGTGCTTTTCTGAATGGAAATCCCATCAGAGTGTCGTCTCAATCTGAACTTGTGAAGTCCCTCCTTTGTACAGAGGTGAGATCCATTCGGATGAGTGGCTCATGTGCATTGAACCTCTGCGGGATTGCATGTGGAAGACTTGATCTCTTCTACGAACAAGGATTTGGGGGCCCATGGGATGTTGCAGGTGGTGCTGTGATTATTGTAGAAGCTGGAGGAGTTTTGTTTGATCCGTAA

Network for GWHGAAZE004904

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00459.26	Inositol_P	8	134	3.20E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10047	VTC4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Ascorbate and aldarate metabolism	map00053
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070

Gene Ontology

GO term	Ontology	Name
GO:0046854	biological_process	phosphatidylinositol phosphorylation
GO:0046855	biological_process	inositol phosphate dephosphorylation
GO:0008934	molecular_function	inositol monophosphate 1-phosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	90.144
	SRR3591706	second leaf	53.555
	SRR3591707	mature leaf	37.677
	SRR3591708	Shoot apex	49.295
	SRR3591709	Stem	64.380
	SRR3591710	White floral bud	90.657
	SRR3591711	White flower	65.367
	SRR3591712	Green floral bud	71.109
	SRR3591713	Yellow flower	62.189
SRP173429	SRR8316895	Juvenile bud stage	32.068
	SRR8316896	Juvenile bud stage	50.177
	SRR8316897	Juvenile bud stage	27.663
	SRR8316894	Third green stage	26.435
	SRR8316900	Third green stage	81.762
	SRR8316901	Third green stage	77.215
	SRR8316898	Complete white stage	38.542
	SRR8316899	Complete white stage	67.487
	SRR8316903	Complete white stage	68.415
	SRR8316902	Silver flowering stage	64.843
	SRR8316904	Silver flowering stage	94.013
	SRR8316905	Silver flowering stage	41.754
	SRR8316906	Gold flowering stage	121.815
	SRR8316907	Gold flowering stage	131.758
	SRR8316908	Gold flowering stage	161.139
SRP132670	SRR6706286	Control	56.228
	SRR6706287	Light intensity 50%	63.336
	SRR6706288	Light intensity 20%	65.374
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.780
	CNS0095593	Slightly white alabastrum(diploid) 2	56.763
	CNS0095594	Slightly white alabastrum(diploid) 3	47.243
	CNS0095595	Whole white alabastrum(diploid) 2	59.032
	CNS0095596	Whole white alabastrum(diploid) 3	61.672
	CNS0095597	Whole white alabastrum(diploid) 4	53.521
	CNS0095598	Silvery flower (diploied) 1	26.244
	CNS0095599	Silvery flower (diploied) 2	33.309
	CNS0095600	Silvery flower (diploied) 3	44.786
	CNS0095601	Golden flower (diploid) 1	22.507
	CNS0095602	Golden flower (diploid) 2	31.132
	CNS0095603	Golden flower (diploid) 3	28.180
	CNS0095604	Slightly white alabastrum(tetraploid) 1	84.463
	CNS0095605	Slightly white alabastrum(tetraploid) 2	87.037
	CNS0095606	Slightly white alabastrum(tetraploid) 3	88.216
	CNS0095607	Whole white alabastrum(tetraploid) 1	90.567
	CNS0095608	Whole white alabastrum(tetraploid) 2	79.555
	CNS0095609	Whole white alabastrum(tetraploid) 3	74.232
	CNS0095610	Silvery flower (tetraploid) 1	56.187
	CNS0095611	Silvery flower (tetraploid) 2	37.676
	CNS0095612	Silvery flower (tetraploid) 3	93.362
	CNS0095613	Golden flower (tetraploid) 1	54.310
	CNS0095614	Golden flower (tetraploid) 2	39.920
	CNS0095615	Golden flower (tetraploid) 3	48.399
CRA001975	CRR073297	Stem 1	57.771
	CRR073298	Stem 2	54.520
	CRR073299	Stem 3	52.053
	CRR073300	Leaf 1	78.243
	CRR073301	Leaf 2	71.904
	CRR073302	Leaf 3	83.290
	CRR073303	Juvenile bud 1	81.972
	CRR073304	Juvenile bud 2	62.762
	CRR073305	Juvenile bud 3	50.921
	CRR073306	Third green 1	73.458
	CRR073307	Third green 2	79.885
	CRR073308	Third green 3	71.899
	CRR073309	Second white 1	86.835
	CRR073310	Second white 2	86.927
	CRR073311	Second white 3	90.584
	CRR073312	Silver flowering 1	84.664
	CRR073313	Silver flowering 2	87.808
	CRR073314	Silver flowering 3	82.862
	CRR073315	Gold flowering 1	42.127
	CRR073316	Gold flowering 2	43.798
	CRR073317	Gold flowering 3	48.420
	CRR073318	Tawny withering 1	41.265
	CRR073319	Tawny withering 2	62.113
	CRR073320	Tawny withering 3	48.659