Detail information of GWHGAAZE004909


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010094689.14.0139E-146Ras-related protein RABA5a [Morus notabilis]
Swissprottr|Q9FGK5|RAA5A_ARATH2E-134Ras-related protein RABA5a
trEMBLtr|W9RJG7|W9RJG7_9ROSA1E-146Ras-related protein RABA5a {ECO:0000313|EMBL:EXB56661.1}
TAIR10AT5G47520.11E-104RAB GTPase homolog A5A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene124199603124200450+
GWHAAZE00000001mRNA124199603124200450+
GWHAAZE00000001exon124199603124199954+
GWHAAZE00000001exon124200113124200450+
GWHAAZE00000001five_prime_UTR124199603124199614+
GWHAAZE00000001CDS124199615124199954+
GWHAAZE00000001CDS124200113124200450+
Transcript Sequence

Network for GWHGAAZE004909

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras161763.60E-61
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07904RAB11A Endocytosis map04144
Pancreatic secretionmap04972
Vasopressin-regulated water reabsorptionmap04962
Endocrine and other factor-regulated calcium reabsorptionmap04961

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.299
SRR3591706second leaf26.841
SRR3591707mature leaf27.889
SRR3591708Shoot apex49.919
SRR3591709Stem29.470
SRR3591710White floral bud14.739
SRR3591711White flower13.474
SRR3591712Green floral bud18.912
SRR3591713Yellow flower8.572
SRP173429 SRR8316895Juvenile bud stage 16.555
SRR8316896Juvenile bud stage 17.105
SRR8316897Juvenile bud stage 8.319
SRR8316894Third green stage 7.035
SRR8316900Third green stage 24.728
SRR8316901Third green stage 25.669
SRR8316898Complete white stage 6.974
SRR8316899Complete white stage 35.927
SRR8316903Complete white stage 9.246
SRR8316902Silver flowering stage2.804
SRR8316904Silver flowering stage4.668
SRR8316905Silver flowering stage2.083
SRR8316906Gold flowering stage 4.568
SRR8316907Gold flowering stage 3.890
SRR8316908Gold flowering stage 2.343
SRP132670SRR6706286Control13.227
SRR6706287Light intensity 50%14.571
SRR6706288Light intensity 20%14.514
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.685
CNS0095593Slightly white alabastrum(diploid) 219.333
CNS0095594Slightly white alabastrum(diploid) 317.964
CNS0095595Whole white alabastrum(diploid) 216.553
CNS0095596Whole white alabastrum(diploid) 318.192
CNS0095597Whole white alabastrum(diploid) 413.442
CNS0095598Silvery flower (diploied) 119.498
CNS0095599Silvery flower (diploied) 28.384
CNS0095600Silvery flower (diploied) 313.123
CNS0095601Golden flower (diploid) 114.256
CNS0095602Golden flower (diploid) 210.138
CNS0095603Golden flower (diploid) 311.891
CNS0095604Slightly white alabastrum(tetraploid) 120.455
CNS0095605Slightly white alabastrum(tetraploid) 216.906
CNS0095606Slightly white alabastrum(tetraploid) 330.162
CNS0095607Whole white alabastrum(tetraploid) 111.586
CNS0095608Whole white alabastrum(tetraploid) 213.808
CNS0095609Whole white alabastrum(tetraploid) 319.445
CNS0095610Silvery flower (tetraploid) 122.896
CNS0095611Silvery flower (tetraploid) 219.852
CNS0095612Silvery flower (tetraploid) 310.701
CNS0095613Golden flower (tetraploid) 18.617
CNS0095614Golden flower (tetraploid) 216.507
CNS0095615Golden flower (tetraploid) 33.169
CRA001975CRR073297Stem 110.944
CRR073298Stem 215.675
CRR073299Stem 312.443
CRR073300Leaf 112.976
CRR073301Leaf 215.412
CRR073302Leaf 38.944
CRR073303Juvenile bud 19.640
CRR073304Juvenile bud 24.666
CRR073305Juvenile bud 311.155
CRR073306Third green 11.236
CRR073307Third green 21.336
CRR073308Third green 31.041
CRR073309Second white 10.279
CRR073310Second white 20.394
CRR073311Second white 30.335
CRR073312Silver flowering 10.618
CRR073313Silver flowering 20.163
CRR073314Silver flowering 30.000
CRR073315Gold flowering 111.926
CRR073316Gold flowering 212.335
CRR073317Gold flowering 36.877
CRR073318Tawny withering 111.590
CRR073319Tawny withering 211.625
CRR073320Tawny withering 316.465