Gene detail

Detail information of GWHGAAZE004910

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007142507.1	0	hypothetical protein PHAVU_008G286500g [Phaseolus vulgaris]
Swissprot	tr\|Q8W034\|RNP1_ARATH	7E-73	Heterogeneous nuclear ribonucleoprotein 1
trEMBL	tr\|V7BDF1\|V7BDF1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW14501.1}
TAIR10	AT3G07810.1	8E-105	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	124222201	124224501	-
GWHAAZE00000001	mRNA	124222201	124224501	-
GWHAAZE00000001	exon	124222201	124222214	-
GWHAAZE00000001	exon	124222621	124223815	-
GWHAAZE00000001	exon	124224280	124224501	-
GWHAAZE00000001	CDS	124224280	124224501	-
GWHAAZE00000001	CDS	124222621	124223815	-
GWHAAZE00000001	CDS	124222201	124222214	-

Transcript Sequence
>GWHTAAZE004916 ATGGAAATGGGGCCCGGAAAGTTGTTTATTGGTGGGATTTCTTGGGACACCAATGAAGATCGTCTAAGAGAATATTTTGAAACTTTTGGTGAAGTGGTGGAAGCTGTGATAATGAAGGATCGGACAACAGGGCGAGCTCGTGGTTTTGGTTTTGTTGTTTTTGCTGAGCCAGCTGTTGCAGAAAGAGTTGTCATGGAAAAGCATATGATAGATGGTAGAACTGTGGAGGCCAAGAAAGCTGTTCCTAGGGATGATCAGCAAATTCTGACCAGGAACAGTGGCAGCCTTCAGGGATCGCCGGGCCCCATCCGAACAAAAAAGATATTTGTAGGAGGTTTAGCATCCACAGTCACTGAGAGTGAATTTAAGAAGTACTTCGACCAATTTGGGACAATCACAGATGTTGTCGTGATGTATGATCACAACACCCAGAGGCCAAGAGGTTTTGGATTCATCACTTTTGATTCAGAGGAAGCAGTTGATAGAGTCTTGCTTAGAACTTTCCATGAATTAAATGGTAAAATGGTTGAGGTCAAACGGGCTGTTCCCAAGGAGTTATCTCCAGGGCCCACTCGGAGCCCGTTACCTGGGCATAACTTTGGTCTCAGCAGAGTCAGTAGCTTCCTTAATGCCTACACTCAAGGATATAATCCTAGCTCTGCTGGAAGCTACGGAGTGAGAATAATGGATGGTAGATTTAGTCCAGTAACTGTCGGCCGGGGTGGATACCCTCCATTCAGCCCGTCTGGTTATGGTGTGGGACCTAATTCTGAGTCGGGTAGTACTACAAGCTATGGAGGAACTGGAAACTTTAGTTCTAATCTCGGCTATGGGCGTGAATTGAATCCTTACTACAATGCAAGTTCAAACAGATATGGTAGCCCAGTTGGTTATGGCAGTGGAAATGGTTCCAGTTTAAGTTCCACGAGTAGGAACTTGTGGGGAACTGGAAGTCTTAATTATGGTACAAACCCCTCAAACTCTAGCAATTTTTTGGGATCTGGAAATGGGACTAATGTGTTGGCAGGTGCATTTGGAAATATTGGAGCAATTTGGGGTTCGTCCGGTCAGGGAGGGGGTTCTGGTTCAGCCTTAGGTATCAGCAATATCAATTATGGAAGTGGTGAAAATGGCTTTGGGTTGAGTGGGGGAGTAGGGTATGGGAGAAACAGTGGAAGTGCTGTTGCTCCAACATCACCGTATGCTGCTGCTACAAATGATGGGCATGGTGGTGGGGCATTTGGAAACTTCTATGGGAGTGGTTCGTTTTATGGGGACCACACTTGGCGGAAATCATCTCCCGATCAAGAGGGCTCTAGCTTGTATGATTATGGGCTTGGGAATGCAGCTTCAGATGTTGCACCTAAAAACTCTGTTGGTTATGTTGGTTATAGTGTTACGAATAGAACAAATAGAGGAATTGCTGCCTAG

Network for GWHGAAZE004910

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	8	74	2.10E-15
PF00076.23	RRM_1	108	165	2.20E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14411	MSI	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.122
	SRR3591706	second leaf	15.319
	SRR3591707	mature leaf	19.413
	SRR3591708	Shoot apex	13.446
	SRR3591709	Stem	47.171
	SRR3591710	White floral bud	59.254
	SRR3591711	White flower	60.878
	SRR3591712	Green floral bud	54.207
	SRR3591713	Yellow flower	64.634
SRP173429	SRR8316895	Juvenile bud stage	12.659
	SRR8316896	Juvenile bud stage	23.205
	SRR8316897	Juvenile bud stage	9.536
	SRR8316894	Third green stage	11.656
	SRR8316900	Third green stage	43.915
	SRR8316901	Third green stage	43.068
	SRR8316898	Complete white stage	24.690
	SRR8316899	Complete white stage	51.651
	SRR8316903	Complete white stage	41.038
	SRR8316902	Silver flowering stage	24.435
	SRR8316904	Silver flowering stage	31.657
	SRR8316905	Silver flowering stage	18.361
	SRR8316906	Gold flowering stage	55.179
	SRR8316907	Gold flowering stage	49.732
	SRR8316908	Gold flowering stage	51.814
SRP132670	SRR6706286	Control	46.812
	SRR6706287	Light intensity 50%	48.084
	SRR6706288	Light intensity 20%	47.509
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.992
	CNS0095593	Slightly white alabastrum(diploid) 2	22.968
	CNS0095594	Slightly white alabastrum(diploid) 3	30.530
	CNS0095595	Whole white alabastrum(diploid) 2	50.826
	CNS0095596	Whole white alabastrum(diploid) 3	52.876
	CNS0095597	Whole white alabastrum(diploid) 4	59.896
	CNS0095598	Silvery flower (diploied) 1	18.362
	CNS0095599	Silvery flower (diploied) 2	25.539
	CNS0095600	Silvery flower (diploied) 3	61.446
	CNS0095601	Golden flower (diploid) 1	21.414
	CNS0095602	Golden flower (diploid) 2	52.468
	CNS0095603	Golden flower (diploid) 3	51.394
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.621
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.436
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.926
	CNS0095607	Whole white alabastrum(tetraploid) 1	56.846
	CNS0095608	Whole white alabastrum(tetraploid) 2	73.905
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.718
	CNS0095610	Silvery flower (tetraploid) 1	66.505
	CNS0095611	Silvery flower (tetraploid) 2	57.268
	CNS0095612	Silvery flower (tetraploid) 3	37.851
	CNS0095613	Golden flower (tetraploid) 1	39.847
	CNS0095614	Golden flower (tetraploid) 2	68.561
	CNS0095615	Golden flower (tetraploid) 3	83.438
CRA001975	CRR073297	Stem 1	29.019
	CRR073298	Stem 2	29.526
	CRR073299	Stem 3	28.076
	CRR073300	Leaf 1	47.952
	CRR073301	Leaf 2	38.154
	CRR073302	Leaf 3	37.354
	CRR073303	Juvenile bud 1	53.080
	CRR073304	Juvenile bud 2	53.496
	CRR073305	Juvenile bud 3	51.868
	CRR073306	Third green 1	44.167
	CRR073307	Third green 2	34.908
	CRR073308	Third green 3	37.000
	CRR073309	Second white 1	32.407
	CRR073310	Second white 2	21.466
	CRR073311	Second white 3	24.041
	CRR073312	Silver flowering 1	29.500
	CRR073313	Silver flowering 2	30.779
	CRR073314	Silver flowering 3	23.475
	CRR073315	Gold flowering 1	18.317
	CRR073316	Gold flowering 2	12.544
	CRR073317	Gold flowering 3	14.080
	CRR073318	Tawny withering 1	38.356
	CRR073319	Tawny withering 2	25.086
	CRR073320	Tawny withering 3	30.559