Detail information of GWHGAAZE004914


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP04504.13.7657E-179unnamed protein product [Coffea canephora]
Swissprottr|Q9M0M5|SCL13_ARATH4E-151Scarecrow-like protein 13
trEMBLtr|A0A068U8I5|A0A068U8I5_COFCA1E-179Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313|EMBL:CDP04504.1}
TAIR10AT4G17230.12E-122SCARECROW-like 13

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene124281582124282511-
GWHAAZE00000001mRNA124281582124282511-
GWHAAZE00000001exon124281582124282511-
GWHAAZE00000001CDS124281582124282511-
Transcript Sequence

Network for GWHGAAZE004914

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS53099.30E-107
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf77.281
SRR3591706second leaf18.777
SRR3591707mature leaf23.481
SRR3591708Shoot apex51.919
SRR3591709Stem97.420
SRR3591710White floral bud41.978
SRR3591711White flower84.450
SRR3591712Green floral bud47.192
SRR3591713Yellow flower86.154
SRP173429 SRR8316895Juvenile bud stage 80.779
SRR8316896Juvenile bud stage 82.215
SRR8316897Juvenile bud stage 66.687
SRR8316894Third green stage 13.779
SRR8316900Third green stage 34.772
SRR8316901Third green stage 58.821
SRR8316898Complete white stage 10.822
SRR8316899Complete white stage 93.718
SRR8316903Complete white stage 17.751
SRR8316902Silver flowering stage21.697
SRR8316904Silver flowering stage18.573
SRR8316905Silver flowering stage12.258
SRR8316906Gold flowering stage 38.892
SRR8316907Gold flowering stage 42.627
SRR8316908Gold flowering stage 42.370
SRP132670SRR6706286Control32.183
SRR6706287Light intensity 50%33.363
SRR6706288Light intensity 20%34.327
CNP0000432CNS0095592Slightly white alabastrum(diploid) 173.877
CNS0095593Slightly white alabastrum(diploid) 296.772
CNS0095594Slightly white alabastrum(diploid) 380.017
CNS0095595Whole white alabastrum(diploid) 254.730
CNS0095596Whole white alabastrum(diploid) 325.666
CNS0095597Whole white alabastrum(diploid) 448.818
CNS0095598Silvery flower (diploied) 1100.667
CNS0095599Silvery flower (diploied) 2112.670
CNS0095600Silvery flower (diploied) 389.669
CNS0095601Golden flower (diploid) 1155.065
CNS0095602Golden flower (diploid) 2112.011
CNS0095603Golden flower (diploid) 3115.006
CNS0095604Slightly white alabastrum(tetraploid) 124.121
CNS0095605Slightly white alabastrum(tetraploid) 220.603
CNS0095606Slightly white alabastrum(tetraploid) 334.794
CNS0095607Whole white alabastrum(tetraploid) 120.400
CNS0095608Whole white alabastrum(tetraploid) 214.603
CNS0095609Whole white alabastrum(tetraploid) 324.996
CNS0095610Silvery flower (tetraploid) 170.965
CNS0095611Silvery flower (tetraploid) 246.079
CNS0095612Silvery flower (tetraploid) 359.592
CNS0095613Golden flower (tetraploid) 156.992
CNS0095614Golden flower (tetraploid) 258.462
CNS0095615Golden flower (tetraploid) 361.340
CRA001975CRR073297Stem 140.386
CRR073298Stem 237.637
CRR073299Stem 343.844
CRR073300Leaf 144.819
CRR073301Leaf 259.180
CRR073302Leaf 333.377
CRR073303Juvenile bud 136.878
CRR073304Juvenile bud 238.742
CRR073305Juvenile bud 362.917
CRR073306Third green 148.389
CRR073307Third green 236.023
CRR073308Third green 336.765
CRR073309Second white 139.040
CRR073310Second white 243.779
CRR073311Second white 340.321
CRR073312Silver flowering 157.095
CRR073313Silver flowering 256.172
CRR073314Silver flowering 352.864
CRR073315Gold flowering 112.325
CRR073316Gold flowering 228.632
CRR073317Gold flowering 327.680
CRR073318Tawny withering 158.854
CRR073319Tawny withering 294.950
CRR073320Tawny withering 363.792