Detail information of GWHGAAZE004941


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007026407.10Root phototropism protein, putative isoform 1 [Theobroma cacao]
Swissprottr|Q9FIK1|Y5780_ARATH0BTB/POZ domain-containing protein At5g47800
trEMBLtr|A0A061GPH2|A0A061GPH2_THECC0Root phototropism protein, putative isoform 1 {ECO:0000313|EMBL:EOY29029.1}
TAIR10AT5G47800.12E-180Phototropic-responsive NPH3 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene124837256124840769-
GWHAAZE00000001mRNA124837256124840769-
GWHAAZE00000001exon124840711124840769-
GWHAAZE00000001exon124840499124840568-
GWHAAZE00000001exon124839453124839854-
GWHAAZE00000001exon124838313124839062-
GWHAAZE00000001exon124837256124837882-
GWHAAZE00000001CDS124840711124840769-
GWHAAZE00000001CDS124840499124840568-
GWHAAZE00000001CDS124839453124839854-
GWHAAZE00000001CDS124838313124839062-
GWHAAZE00000001CDS124837388124837882-
GWHAAZE00000001three_prime_UTR124837256124837387-
Transcript Sequence

Network for GWHGAAZE004941

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0169


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03000.15NPH32004542.00E-84
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.031
SRR3591706second leaf1.013
SRR3591707mature leaf1.590
SRR3591708Shoot apex5.667
SRR3591709Stem28.917
SRR3591710White floral bud3.775
SRR3591711White flower2.399
SRR3591712Green floral bud8.138
SRR3591713Yellow flower0.744
SRP173429 SRR8316895Juvenile bud stage 2.192
SRR8316896Juvenile bud stage 3.282
SRR8316897Juvenile bud stage 0.737
SRR8316894Third green stage 3.267
SRR8316900Third green stage 9.474
SRR8316901Third green stage 8.689
SRR8316898Complete white stage 1.387
SRR8316899Complete white stage 25.015
SRR8316903Complete white stage 3.872
SRR8316902Silver flowering stage0.272
SRR8316904Silver flowering stage0.597
SRR8316905Silver flowering stage0.116
SRR8316906Gold flowering stage 0.219
SRR8316907Gold flowering stage 0.548
SRR8316908Gold flowering stage 0.442
SRP132670SRR6706286Control6.446
SRR6706287Light intensity 50%7.375
SRR6706288Light intensity 20%8.070
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.744
CNS0095593Slightly white alabastrum(diploid) 24.163
CNS0095594Slightly white alabastrum(diploid) 32.471
CNS0095595Whole white alabastrum(diploid) 24.102
CNS0095596Whole white alabastrum(diploid) 32.394
CNS0095597Whole white alabastrum(diploid) 43.835
CNS0095598Silvery flower (diploied) 12.484
CNS0095599Silvery flower (diploied) 22.159
CNS0095600Silvery flower (diploied) 31.230
CNS0095601Golden flower (diploid) 10.677
CNS0095602Golden flower (diploid) 21.078
CNS0095603Golden flower (diploid) 30.861
CNS0095604Slightly white alabastrum(tetraploid) 13.737
CNS0095605Slightly white alabastrum(tetraploid) 22.609
CNS0095606Slightly white alabastrum(tetraploid) 310.020
CNS0095607Whole white alabastrum(tetraploid) 15.028
CNS0095608Whole white alabastrum(tetraploid) 24.027
CNS0095609Whole white alabastrum(tetraploid) 32.382
CNS0095610Silvery flower (tetraploid) 10.590
CNS0095611Silvery flower (tetraploid) 20.479
CNS0095612Silvery flower (tetraploid) 30.629
CNS0095613Golden flower (tetraploid) 10.086
CNS0095614Golden flower (tetraploid) 20.201
CNS0095615Golden flower (tetraploid) 30.202
CRA001975CRR073297Stem 15.748
CRR073298Stem 25.224
CRR073299Stem 33.988
CRR073300Leaf 113.937
CRR073301Leaf 211.848
CRR073302Leaf 38.318
CRR073303Juvenile bud 116.529
CRR073304Juvenile bud 210.316
CRR073305Juvenile bud 321.126
CRR073306Third green 10.737
CRR073307Third green 20.867
CRR073308Third green 30.959
CRR073309Second white 10.000
CRR073310Second white 20.178
CRR073311Second white 30.000
CRR073312Silver flowering 10.078
CRR073313Silver flowering 20.039
CRR073314Silver flowering 30.034
CRR073315Gold flowering 10.905
CRR073316Gold flowering 21.622
CRR073317Gold flowering 30.487
CRR073318Tawny withering 14.393
CRR073319Tawny withering 24.194
CRR073320Tawny withering 36.102