Gene detail

Detail information of GWHGAAZE004945

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006467225.1	0	PREDICTED: glucan endo-1,3-beta-glucosidase 5-like [Citrus sinensis]
Swissprot	tr\|Q9M088\|E135_ARATH	2E-162	Glucan endo-1,3-beta-glucosidase 5 (Precursor)
trEMBL	tr\|A0A067GG27\|A0A067GG27_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO78653.1}
TAIR10	AT4G17180.1	0	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	124926754	124929728	-
GWHAAZE00000001	mRNA	124926754	124929728	-
GWHAAZE00000001	exon	124926754	124927858	-
GWHAAZE00000001	exon	124929373	124929728	-
GWHAAZE00000001	CDS	124929373	124929728	-
GWHAAZE00000001	CDS	124926754	124927858	-

Transcript Sequence
>GWHTAAZE004951 ATGAAAATGGGAGAAAGTGGAGGGCTTGTTGTTGTTGTGGTTTTGGCGGTGGTGGTGTTGGGACCGATGGCGGGGGAATCAACCGTAGGAATAGGGGTGAACTGGGGAACGGTGTCGATGCACAGGCTATCACCGTATACGGTAGTGGATCTGATGAAAGAGAACAAGATAAGGAAGGTTAAACTGTTCGATGCGGACCCGGGTTCCCTCAAAGCCCTGATGGGGAGTGGGATCGAGGTTATGGTGGGGATCCCCAATGAGATGCTGTCCCTCCTTGGCTCCTCCTCTTCTGCCTCTGATTTGTGGATCAACCGCAATATCTCCGCCTTCTTGGTTAAAGGCGGTGCCAACATCAAGTATGTTGCTGTAGGAAATGAGCCATTCCTTACGAGTTATGGTGGTCAATTCCAGTCTTACGTTATCCCTGCTCTGATGAATCTACAACAATCCTTGGCCAAAGCCAACCTTGCAGGCTTAGTGAAGCTAGTGGTCCCTTGTAATGCTGACGCCTATGAGTCTTCCCTCCCTTCTCAAGGAGCCTTCCGGCCAGAACTGACTCAAATTATGACCCAACTTGTTTCATTCCTTAATTCCAATGGCTCCCCATTCATGGTCAATATCTACCCATTTTTAAGCCTCTATGGGAACTCGGATTTTCCACAAGACTATGCATTTTTCGAGGGGACAAACCATCCTGTGATAGATGGGCCAAATGTATACTACAATGCGTTTGATGGAAATTTTGACACTTTAGTTGCAGCTCTCAGCAAAATTGGTTACAGTCAGATGCCCATAGTTATAGGCGAGGTAGGTTGGCCTACAGATGGAACCATGGGTGCAAATCTTACTGCTGCCAGGGCATTCAACCAAGGTCTCATAAAACACGTCCTAAGCAATAAAGGAACCCCTCTGAGGCCAGCTTCCCCCCCTATGGATGTTTACCTCTTCGGTCTTCTGGATGAAGGAGCAAAGAGCGTACTTCCGGGGAACTTTGAGAGGCACTGGGGTATCTTCTCTTTTGATGGACAGGCAAAGTACGCGCTTAACCTTGGATTGGGCAATGGATTACTGAAAAATGCAAAGGATGTTGAATATCTGCAGTCCAGGTGGTGTGTGGCAGACCCATCCAGAGATCTTTCTGGTGTAGCTAACCACTTTAAGCTGGCCTGTACTGTTGCGGATTGCACAACGCTCAACTACGGGGGATCGTGTAACCGAATTGGGGAGAAGGGAAATATCTCTTATGCATTCAACAGTTACTACCAGCTACAGAAACAGAGTTCACGCAGCTGCGATTTCGATGGGCTTGGGTTGGTCACCTTTCTAGATCCTTCAGTTGGTGAATGCAGATTTCTTGTTGGTACCACAGACACTGCCAAGTCTTCAGGGGTTAGTTTGAAATTGAATCATAGGTGGGAGTTGGTTTTCTGTGGGGTTTGGATGTTATTGGTGGTCATTTGA

Network for GWHGAAZE004945

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0170

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.19	Glyco_hydro_17	31	349	1.00E-66
PF07983.14	X8	370	437	4.20E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.856
	SRR3591706	second leaf	22.180
	SRR3591707	mature leaf	15.518
	SRR3591708	Shoot apex	26.042
	SRR3591709	Stem	36.156
	SRR3591710	White floral bud	17.161
	SRR3591711	White flower	15.234
	SRR3591712	Green floral bud	29.553
	SRR3591713	Yellow flower	3.756
SRP173429	SRR8316895	Juvenile bud stage	27.662
	SRR8316896	Juvenile bud stage	32.237
	SRR8316897	Juvenile bud stage	14.442
	SRR8316894	Third green stage	11.430
	SRR8316900	Third green stage	33.897
	SRR8316901	Third green stage	32.075
	SRR8316898	Complete white stage	6.044
	SRR8316899	Complete white stage	47.299
	SRR8316903	Complete white stage	10.489
	SRR8316902	Silver flowering stage	2.372
	SRR8316904	Silver flowering stage	3.008
	SRR8316905	Silver flowering stage	1.123
	SRR8316906	Gold flowering stage	3.799
	SRR8316907	Gold flowering stage	4.739
	SRR8316908	Gold flowering stage	5.382
SRP132670	SRR6706286	Control	27.417
	SRR6706287	Light intensity 50%	28.017
	SRR6706288	Light intensity 20%	32.021
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.949
	CNS0095593	Slightly white alabastrum(diploid) 2	40.881
	CNS0095594	Slightly white alabastrum(diploid) 3	35.293
	CNS0095595	Whole white alabastrum(diploid) 2	36.412
	CNS0095596	Whole white alabastrum(diploid) 3	30.826
	CNS0095597	Whole white alabastrum(diploid) 4	31.091
	CNS0095598	Silvery flower (diploied) 1	43.172
	CNS0095599	Silvery flower (diploied) 2	39.519
	CNS0095600	Silvery flower (diploied) 3	23.923
	CNS0095601	Golden flower (diploid) 1	37.715
	CNS0095602	Golden flower (diploid) 2	29.535
	CNS0095603	Golden flower (diploid) 3	30.618
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.317
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.603
	CNS0095606	Slightly white alabastrum(tetraploid) 3	69.581
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.590
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.693
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.047
	CNS0095610	Silvery flower (tetraploid) 1	22.143
	CNS0095611	Silvery flower (tetraploid) 2	29.014
	CNS0095612	Silvery flower (tetraploid) 3	14.105
	CNS0095613	Golden flower (tetraploid) 1	6.812
	CNS0095614	Golden flower (tetraploid) 2	16.846
	CNS0095615	Golden flower (tetraploid) 3	3.432
CRA001975	CRR073297	Stem 1	48.514
	CRR073298	Stem 2	46.486
	CRR073299	Stem 3	62.917
	CRR073300	Leaf 1	41.928
	CRR073301	Leaf 2	42.692
	CRR073302	Leaf 3	45.780
	CRR073303	Juvenile bud 1	48.964
	CRR073304	Juvenile bud 2	36.364
	CRR073305	Juvenile bud 3	64.425
	CRR073306	Third green 1	2.457
	CRR073307	Third green 2	3.965
	CRR073308	Third green 3	5.376
	CRR073309	Second white 1	4.632
	CRR073310	Second white 2	1.485
	CRR073311	Second white 3	1.652
	CRR073312	Silver flowering 1	2.024
	CRR073313	Silver flowering 2	3.946
	CRR073314	Silver flowering 3	2.785
	CRR073315	Gold flowering 1	33.961
	CRR073316	Gold flowering 2	42.638
	CRR073317	Gold flowering 3	40.332
	CRR073318	Tawny withering 1	64.281
	CRR073319	Tawny withering 2	44.195
	CRR073320	Tawny withering 3	62.504