Gene detail

Detail information of GWHGAAZE004951

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KCW74894.1	6.125E-146	hypothetical protein EUGRSUZ_E03634 [Eucalyptus grandis]
Swissprot	tr\|O81832\|Y4729_ARATH	2E-80	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|A0A059C9H8\|A0A059C9H8_EUCGR	2E-146	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}
TAIR10	AT4G27290.1	4E-72	S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	125088140	125092151	-
GWHAAZE00000001	mRNA	125088140	125092151	-
GWHAAZE00000001	exon	125088140	125088379	-
GWHAAZE00000001	exon	125088815	125088959	-
GWHAAZE00000001	exon	125090576	125090667	-
GWHAAZE00000001	exon	125090779	125091130	-
GWHAAZE00000001	exon	125091282	125091909	-
GWHAAZE00000001	exon	125092103	125092151	-
GWHAAZE00000001	CDS	125092103	125092151	-
GWHAAZE00000001	CDS	125091282	125091909	-
GWHAAZE00000001	CDS	125090779	125091130	-
GWHAAZE00000001	CDS	125090576	125090667	-
GWHAAZE00000001	CDS	125088815	125088959	-
GWHAAZE00000001	CDS	125088140	125088379	-

Transcript Sequence
>GWHTAAZE004957 ATGACCAAGTATAGAGCGCGCAAAAATCTTGTAGATCCAAGCACACCCTGTTTCTTCAGCCCCAGAAATTCCAACAACCAGTACCTGGGAATTTGGTTCAACAACATCCCAAATCGAACTGTTGTTTGGGTAGCAAATAGAGATAATCCGTTCAACGAATCAACAGGCATTCTCAGGCTTGGGGATGATGGAAATTTGATTCTTGTTGACCAAACAAATCGGACCGCCTGGTCTTCGAATGCTACCCAGAGTATACCGGTAAATAATATTGTTGCACAGCTCTTGGACACTGGAAATCTTGTTTTGAGAGATGAGAGCGGAAATGATGAATCCTTTATATGGCAAAGCTTTGATTATCCTTCTGATACCTTGTTAGCAGGCATGAAGATTGGCTGGGACATTGAAATTGGTTTGAACCGATATCTTACATCCTGGGAAAATGCGGACAACCCATCTCGTGGATCGTTTACTTATTCTCTTGATATTGGGGTACTACCGCAATTTGTTCTTCGTAGAGGTCCTGATAAACAGTTCCGAAGTGGGATGTGGAATGGAGTTCAATTTAGTGGAATCCTTCTGTTGCCAAACCTCGTTTATGTGCCTATGGTCGTCACAAATTCTCGTGAGACTTATTATGAATATGGCCTCTACAACGATTCCATTGTAACAATGTTTCGCTGCTTGACTGGGTACGTACCTAGATCGCCTCGAGATTGGGATATCTTTATCAGATCCGGTGGGTGCGTTAGGAGGGACCCTCTGAACTGTTCCACGGGAGAAGGTTTTATAGAGCTTGAAGATATGAAGATGCCTGATTTGTTGCGGTTTTGGAAGAGCAACACTAGTATGACAATGGATGAATGTAGAAGGGAGTGCTTGAGGAATTGTTCTTGTACAGCGTATACTAATCCAAATGCTACTGCAGAGAATAGTGGTTGCTTGCTCTGGTTTGAGGATCTCACTGATCTTAGGATATTACAGCAAAATGGCAGTGAGAAACTTTATCTTCGCGTTACAGCTTCAGATCTCCAAGGTACTGGTGGCGGTGACTGTCTCGGTAGCAATCGGAGTACTGCTTTTTGTTGCCTCTTGTATCATTTGGAAGAGGAGATTAATCTTCGGTATGTGCTTAAAGGTACAAATTCAGATATTCCAGCAAAAGATTTTCAAGAAAAAGATGACGAAAATATAGACTTATCGATCTTCAGTAGGGCCACAATTGAAGAAGCAACTGATTACTTTTCTTTGTCAAACAAGATTGGTGAGATAGATCAAGAAATAATTTTCTTGTGTGGAGAAGAGCGCTTTGATATTATTGTTGGGATTGCTCGTGGGCTTCTTTATCTTCACCGGGATTCAAGATTAAGAATAATTCACAGGGATCTTAAAGCCAGCAATGTCTTGCTAGACAGTGATATGAATCCTAAAATATCTGATTTCGGCACTGCTAGAGCTTTTGGAGGAGATCAATCACTTGCAAAAACAATGAGAGTGATTGGAACTTAG

Network for GWHGAAZE004951

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	40	145	1.70E-38
PF08276.12	PAN_2	256	323	2.50E-17
PF00069.26	Pkinase	434	495	3.50E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.821
	SRR3591706	second leaf	5.209
	SRR3591707	mature leaf	6.838
	SRR3591708	Shoot apex	3.455
	SRR3591709	Stem	9.221
	SRR3591710	White floral bud	3.451
	SRR3591711	White flower	9.852
	SRR3591712	Green floral bud	1.672
	SRR3591713	Yellow flower	15.389
SRP173429	SRR8316895	Juvenile bud stage	0.774
	SRR8316896	Juvenile bud stage	0.819
	SRR8316897	Juvenile bud stage	0.345
	SRR8316894	Third green stage	0.429
	SRR8316900	Third green stage	0.897
	SRR8316901	Third green stage	0.887
	SRR8316898	Complete white stage	0.679
	SRR8316899	Complete white stage	2.324
	SRR8316903	Complete white stage	0.799
	SRR8316902	Silver flowering stage	0.555
	SRR8316904	Silver flowering stage	1.136
	SRR8316905	Silver flowering stage	0.296
	SRR8316906	Gold flowering stage	1.981
	SRR8316907	Gold flowering stage	1.485
	SRR8316908	Gold flowering stage	2.508
SRP132670	SRR6706286	Control	0.215
	SRR6706287	Light intensity 50%	0.270
	SRR6706288	Light intensity 20%	0.190
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.068
	CNS0095593	Slightly white alabastrum(diploid) 2	0.461
	CNS0095594	Slightly white alabastrum(diploid) 3	0.665
	CNS0095595	Whole white alabastrum(diploid) 2	0.221
	CNS0095596	Whole white alabastrum(diploid) 3	0.193
	CNS0095597	Whole white alabastrum(diploid) 4	0.412
	CNS0095598	Silvery flower (diploied) 1	1.129
	CNS0095599	Silvery flower (diploied) 2	1.462
	CNS0095600	Silvery flower (diploied) 3	1.398
	CNS0095601	Golden flower (diploid) 1	1.023
	CNS0095602	Golden flower (diploid) 2	3.679
	CNS0095603	Golden flower (diploid) 3	3.400
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.158
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.108
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.161
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.051
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.454
	CNS0095610	Silvery flower (tetraploid) 1	1.907
	CNS0095611	Silvery flower (tetraploid) 2	0.610
	CNS0095612	Silvery flower (tetraploid) 3	0.438
	CNS0095613	Golden flower (tetraploid) 1	1.489
	CNS0095614	Golden flower (tetraploid) 2	2.843
	CNS0095615	Golden flower (tetraploid) 3	3.627
CRA001975	CRR073297	Stem 1	1.312
	CRR073298	Stem 2	1.658
	CRR073299	Stem 3	1.460
	CRR073300	Leaf 1	1.650
	CRR073301	Leaf 2	0.837
	CRR073302	Leaf 3	1.278
	CRR073303	Juvenile bud 1	1.179
	CRR073304	Juvenile bud 2	1.147
	CRR073305	Juvenile bud 3	2.075
	CRR073306	Third green 1	0.537
	CRR073307	Third green 2	0.386
	CRR073308	Third green 3	0.974
	CRR073309	Second white 1	0.253
	CRR073310	Second white 2	0.326
	CRR073311	Second white 3	0.656
	CRR073312	Silver flowering 1	0.810
	CRR073313	Silver flowering 2	0.912
	CRR073314	Silver flowering 3	1.032
	CRR073315	Gold flowering 1	0.254
	CRR073316	Gold flowering 2	1.051
	CRR073317	Gold flowering 3	0.958
	CRR073318	Tawny withering 1	2.107
	CRR073319	Tawny withering 2	1.601
	CRR073320	Tawny withering 3	1.951