Detail information of GWHGAAZE004955


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007025874.10Receptor kinase 3 isoform 2, partial [Theobroma cacao]
Swissprottr|O81832|Y4729_ARATH2E-148G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBLtr|A0A061GG05|A0A061GG05_THECC0Receptor kinase 3 isoform 2 {ECO:0000313|EMBL:EOY28496.1} (Fragment)
TAIR10AT4G27290.16E-103S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene125148498125151494-
GWHAAZE00000001mRNA125148498125151494-
GWHAAZE00000001exon125148498125148736-
GWHAAZE00000001exon125149370125149510-
GWHAAZE00000001exon125149587125149727-
GWHAAZE00000001exon125150231125151494-
GWHAAZE00000001CDS125150231125151494-
GWHAAZE00000001CDS125149587125149727-
GWHAAZE00000001CDS125149370125149510-
GWHAAZE00000001CDS125148498125148736-
Transcript Sequence

Network for GWHGAAZE004955

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01453.25B_lectin741772.60E-35
PF00954.21S_locus_glycop2093162.20E-26
PF08276.12PAN_23384028.80E-16
PF00069.26Pkinase5195892.80E-14
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_DLSV

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0048544biological_processrecognition of pollen
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.571
SRR3591706second leaf5.199
SRR3591707mature leaf2.909
SRR3591708Shoot apex8.289
SRR3591709Stem6.283
SRR3591710White floral bud5.675
SRR3591711White flower6.805
SRR3591712Green floral bud7.355
SRR3591713Yellow flower5.168
SRP173429 SRR8316895Juvenile bud stage 11.139
SRR8316896Juvenile bud stage 9.045
SRR8316897Juvenile bud stage 7.734
SRR8316894Third green stage 2.772
SRR8316900Third green stage 7.466
SRR8316901Third green stage 5.857
SRR8316898Complete white stage 1.933
SRR8316899Complete white stage 12.801
SRR8316903Complete white stage 3.962
SRR8316902Silver flowering stage1.479
SRR8316904Silver flowering stage2.454
SRR8316905Silver flowering stage1.161
SRR8316906Gold flowering stage 6.853
SRR8316907Gold flowering stage 3.319
SRR8316908Gold flowering stage 8.160
SRP132670SRR6706286Control1.991
SRR6706287Light intensity 50%3.377
SRR6706288Light intensity 20%3.109
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.367
CNS0095593Slightly white alabastrum(diploid) 24.162
CNS0095594Slightly white alabastrum(diploid) 34.574
CNS0095595Whole white alabastrum(diploid) 23.528
CNS0095596Whole white alabastrum(diploid) 31.546
CNS0095597Whole white alabastrum(diploid) 42.865
CNS0095598Silvery flower (diploied) 17.898
CNS0095599Silvery flower (diploied) 210.062
CNS0095600Silvery flower (diploied) 35.891
CNS0095601Golden flower (diploid) 19.773
CNS0095602Golden flower (diploid) 29.453
CNS0095603Golden flower (diploid) 38.717
CNS0095604Slightly white alabastrum(tetraploid) 12.700
CNS0095605Slightly white alabastrum(tetraploid) 22.497
CNS0095606Slightly white alabastrum(tetraploid) 38.822
CNS0095607Whole white alabastrum(tetraploid) 12.050
CNS0095608Whole white alabastrum(tetraploid) 20.616
CNS0095609Whole white alabastrum(tetraploid) 36.041
CNS0095610Silvery flower (tetraploid) 13.733
CNS0095611Silvery flower (tetraploid) 25.496
CNS0095612Silvery flower (tetraploid) 33.079
CNS0095613Golden flower (tetraploid) 11.621
CNS0095614Golden flower (tetraploid) 23.801
CNS0095615Golden flower (tetraploid) 30.854
CRA001975CRR073297Stem 13.162
CRR073298Stem 23.792
CRR073299Stem 31.108
CRR073300Leaf 12.038
CRR073301Leaf 21.519
CRR073302Leaf 31.544
CRR073303Juvenile bud 11.056
CRR073304Juvenile bud 20.761
CRR073305Juvenile bud 31.143
CRR073306Third green 10.032
CRR073307Third green 20.259
CRR073308Third green 30.053
CRR073309Second white 10.275
CRR073310Second white 20.109
CRR073311Second white 30.141
CRR073312Silver flowering 10.173
CRR073313Silver flowering 20.152
CRR073314Silver flowering 30.777
CRR073315Gold flowering 11.481
CRR073316Gold flowering 22.495
CRR073317Gold flowering 30.708
CRR073318Tawny withering 12.304
CRR073319Tawny withering 22.422
CRR073320Tawny withering 31.817