Gene detail

Detail information of GWHGAAZE004959

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002274590.2	PREDICTED: LOW QUALITY PROTEIN: GMP synthase [glutamine-hydrolyzing] [Vitis vinifera]
trEMBL	tr\|F6HUC3\|F6HUC3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58346.1}
TAIR10	AT1G63660.1	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	51279	55510	+
GWHAAZE00000002	mRNA	51279	55510	+
GWHAAZE00000002	exon	51279	51827	+
GWHAAZE00000002	exon	53379	53629	+
GWHAAZE00000002	exon	54062	54205	+
GWHAAZE00000002	exon	54262	54436	+
GWHAAZE00000002	exon	54879	54947	+
GWHAAZE00000002	exon	55108	55196	+
GWHAAZE00000002	exon	55387	55510	+
GWHAAZE00000002	CDS	51279	51827	+
GWHAAZE00000002	CDS	53379	53629	+
GWHAAZE00000002	CDS	54062	54205	+
GWHAAZE00000002	CDS	54262	54436	+
GWHAAZE00000002	CDS	54879	54947	+
GWHAAZE00000002	CDS	55108	55196	+
GWHAAZE00000002	CDS	55387	55510	+

Transcript Sequence
>GWHTAAZE004965 ATGGAAGCTCAGGCCGTAAAGTCAAACCTAGTCCTCATCTTAGACTATGGCTCCCAATACACGCACCTCATAACCCGCCGGATCCGCTCCCTCTCCGTCTTCTCCCTCACCATCTCCGGCACCTCACCACTCAAAACCATCACCGACCTAAACCCATCTGTAATCATACTCTCCGGGGGGCCACACTCGTTACACGCGCCCCACGCGCCTACCTTCCCAGACGGGTTCATCGAATACGTGGAGTCGAATGGAATCTTTGTTTTGGGGATATGTTATGGGCTGCAGTTGGTGGTGCAGAGGCTGGGTGGGGTGGTTAGGGTTGGGGAGAAGCAGGAATATGGGAGAATGGTAATTGAAGTTGTAAAGAAGGATTGTGGATTGTTTGGGTATGAGAGGGTTGGGGATAGTCAGGTTGTTTGGATGAGTCATGGTGATGAGGCCGTGGAATTGCCTGTCGGGTTTGAGGTTGTGGCGCAGAGCCAGCAGGGGGTTGTGGCCGCTGTCGAGTGTCCCGGGAGAAGGTTTTATGGCCTTCAATATCATCCCGAGGTGACACATTCACCGGAAGGAATGGAAACATTGCGGCATTTCCTCTTTGATGTTTGTGGAGTAACAGCAGGCTGGAAGATGGAAGATGTGCTCGAAGAAGAAATCAAAGTTATCAATCGCTTGGTTGCCCCTGAAGAACATGTCATTTGTGCATTATCTGGCGGTGTGGATTCAACAGTTGCAGCCACTCTTGTTCACAAGGCAATTGGAGATAGGCTTCACTGTATTTTTGTGGATAATGGTTTATTGAGGTATAAGGAGAGAGAACGGGTGATGAAGACATTTGAAAGGGATCTTCATTTACCTGTCACCTGTGTTGACGCAACAGAACAATTTCTTAGCAAGCTGAAGGGTGTGGTAGATCCTGAGATGAAGAGGAAAATAATTGGAAAGGAACCCGCTTACTTGGTCCAAGGAACCTTATATCCGGATGTAATTGAATCTTGCCCACCACCTGGAAGTGGAAGAACCCACTCTCATACAATCAAGAGCCACCACAATGTTGGTGGACTTCCCAAGAACATGAAATTGAAGCTCATTGAACCACTTAAATTATTGTTCAAGGATGAGGGCCTGGCCTTGCAGTGCGAAGTTTTGGGCGATGTGACAGAAGGAAATGCCCTTGATATCCTTCGCCAGATCAGTCGGGTTCAAGGAGATCAAAGAACGCATTCTCATGTTGTTGCACTTAGAGCTGTCACCAGTCAAGATGGAATGACAGCAGATTGGTTCAATTTTGAACACAAGTTCCTTGATGATGTGGCTAGAAAGATATGCAATAGCGTTCGTGGTGTAAATCGGGTTGTTCAAGACATTACATCAAAGCCTCCCTCAACAATTGAGTGGGAATGA

Network for GWHGAAZE004959

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00117.29	GATase	13	200	2.50E-31
PF00958.23	GMP_synt_C	400	465	8.10E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01951	guaA, GMPS	Metabolic pathways	map01100
		Purine metabolism	map00230
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0006177	biological_process	GMP biosynthetic process
GO:0006164	biological_process	purine nucleotide biosynthetic process
GO:0003922	molecular_function	GMP synthase (glutamine-hydrolyzing) activity
GO:0005524	molecular_function	ATP binding
GO:0016462	molecular_function	pyrophosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.594
	SRR3591706	second leaf	0.421
	SRR3591707	mature leaf	0.410
	SRR3591708	Shoot apex	4.573
	SRR3591709	Stem	2.111
	SRR3591710	White floral bud	0.725
	SRR3591711	White flower	3.020
	SRR3591712	Green floral bud	1.781
	SRR3591713	Yellow flower	1.012
SRP173429	SRR8316895	Juvenile bud stage	2.733
	SRR8316896	Juvenile bud stage	3.712
	SRR8316897	Juvenile bud stage	0.997
	SRR8316894	Third green stage	0.656
	SRR8316900	Third green stage	1.699
	SRR8316901	Third green stage	1.989
	SRR8316898	Complete white stage	0.208
	SRR8316899	Complete white stage	2.227
	SRR8316903	Complete white stage	0.147
	SRR8316902	Silver flowering stage	0.179
	SRR8316904	Silver flowering stage	0.354
	SRR8316905	Silver flowering stage	0.403
	SRR8316906	Gold flowering stage	1.378
	SRR8316907	Gold flowering stage	1.242
	SRR8316908	Gold flowering stage	0.461
SRP132670	SRR6706286	Control	1.791
	SRR6706287	Light intensity 50%	2.122
	SRR6706288	Light intensity 20%	2.166
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.681
	CNS0095593	Slightly white alabastrum(diploid) 2	2.522
	CNS0095594	Slightly white alabastrum(diploid) 3	1.352
	CNS0095595	Whole white alabastrum(diploid) 2	1.078
	CNS0095596	Whole white alabastrum(diploid) 3	1.851
	CNS0095597	Whole white alabastrum(diploid) 4	1.228
	CNS0095598	Silvery flower (diploied) 1	0.327
	CNS0095599	Silvery flower (diploied) 2	0.919
	CNS0095600	Silvery flower (diploied) 3	0.798
	CNS0095601	Golden flower (diploid) 1	0.425
	CNS0095602	Golden flower (diploid) 2	0.648
	CNS0095603	Golden flower (diploid) 3	0.487
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.354
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.474
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.904
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.609
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.598
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.307
	CNS0095610	Silvery flower (tetraploid) 1	1.787
	CNS0095611	Silvery flower (tetraploid) 2	0.709
	CNS0095612	Silvery flower (tetraploid) 3	1.873
	CNS0095613	Golden flower (tetraploid) 1	0.400
	CNS0095614	Golden flower (tetraploid) 2	0.759
	CNS0095615	Golden flower (tetraploid) 3	0.021
CRA001975	CRR073297	Stem 1	2.384
	CRR073298	Stem 2	1.847
	CRR073299	Stem 3	2.004
	CRR073300	Leaf 1	0.934
	CRR073301	Leaf 2	1.041
	CRR073302	Leaf 3	1.031
	CRR073303	Juvenile bud 1	1.229
	CRR073304	Juvenile bud 2	0.589
	CRR073305	Juvenile bud 3	1.365
	CRR073306	Third green 1	0.305
	CRR073307	Third green 2	0.696
	CRR073308	Third green 3	0.327
	CRR073309	Second white 1	1.869
	CRR073310	Second white 2	0.796
	CRR073311	Second white 3	1.305
	CRR073312	Silver flowering 1	0.459
	CRR073313	Silver flowering 2	0.962
	CRR073314	Silver flowering 3	0.406
	CRR073315	Gold flowering 1	0.370
	CRR073316	Gold flowering 2	0.166
	CRR073317	Gold flowering 3	0.574
	CRR073318	Tawny withering 1	1.096
	CRR073319	Tawny withering 2	0.841
	CRR073320	Tawny withering 3	2.100