Gene detail

Detail information of GWHGAAZE004973

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011086317.1	0	PREDICTED: isocitrate dehydrogenase [NADP] isoform X1 [Sesamum indicum]
Swissprot	tr\|P50218\|IDHC_TOBAC	0	Isocitrate dehydrogenase [NADP]
trEMBL	tr\|B9H3K3\|B9H3K3_POPTR	0	Isocitrate dehydrogenase [NADP] {ECO:0000256\|PIRNR:PIRNR000108}
TAIR10	AT1G54340.1	1E-167	isocitrate dehydrogenase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	530921	537051	+
GWHAAZE00000002	mRNA	530921	537051	+
GWHAAZE00000002	exon	530921	530996	+
GWHAAZE00000002	exon	531094	531147	+
GWHAAZE00000002	exon	531234	531335	+
GWHAAZE00000002	exon	531477	531568	+
GWHAAZE00000002	exon	535732	535835	+
GWHAAZE00000002	exon	535983	536051	+
GWHAAZE00000002	exon	536127	536242	+
GWHAAZE00000002	exon	536370	536404	+
GWHAAZE00000002	exon	536493	536635	+
GWHAAZE00000002	exon	536747	536869	+
GWHAAZE00000002	exon	536958	537051	+
GWHAAZE00000002	CDS	530921	530996	+
GWHAAZE00000002	CDS	531094	531147	+
GWHAAZE00000002	CDS	531234	531335	+
GWHAAZE00000002	CDS	531477	531568	+
GWHAAZE00000002	CDS	535732	535835	+
GWHAAZE00000002	CDS	535983	536051	+
GWHAAZE00000002	CDS	536127	536242	+
GWHAAZE00000002	CDS	536370	536404	+
GWHAAZE00000002	CDS	536493	536635	+
GWHAAZE00000002	CDS	536747	536869	+
GWHAAZE00000002	CDS	536958	537051	+

Transcript Sequence
>GWHTAAZE004979 GAAGCACGCGCTAAGGAGTTCAAGCTGAAACATATGTGGAAGAGTCCAAATGGGACCATTCGAAACATTTTAAATGGAACGGTTTTCAGAGAACCCATTATCTTTGAAAATATTCCCCGGCTTGTCCCAGGTTGGACCAAGCCAATATGCATCGGGAGGCATGCTTTTGGTGATCAGTATCGAGCTACTGATCTAGTTATTGAAGGATCTGGAAAACTGAAAATGGTGTTTGTACCGGATGGCCAACCTGAGAAAACAGAATTTGAAGTATTCCAATTTACTGGTGCTGGTGGAGTAGCTCTGTCAATGTATAACACTGATGAGTCCATTTGTGCTTTTGCTGAGGCTTCAATGACCACAGCTTACCAGAAACGGTGGCCACTTTATCTTAGCACCAAAAACACTATACTTAAAAAATATGACGGAAGATTCATGGATATTTTCCAACAAGTTTATGAAAAAGGTTGGAGATCCAAGTTTGAGTCCGCAGGGATCTGGTATGAACATCGTCTTATAGATGATATGGTTGCTTTTGCGCTCAAGAGTGAGGGAGGTTACGTATGGGCGTGCAAGAACTACGATGGAGACGTTCAAAGTGATTTTCTGGCCCAAGGGTTTGGATCATTGGGTTTGATGACATCTGTACTGGTATGCCCAGATGGAAAGACTATCGAAGCTGAAGCAGCCCATGGCACAGTTACTCGTCATTACCGAGTTCATCAAAAAGGAGGGGAAACTAGCACTAACAGCATAGCTTCAATCTTTGCATGGTCACGAGGGCTTGCCCACAGGGCAAAATTGGACGACAACTCTAGACTTTTAGATTTCACTGAGAAACTGGAAGCAGCCTGCGTTGCAACAGTTGAACAGGGAAAGATGACTAAGGATCTTGCACTTCTTCTCCACGGGGCCAAGGTTACTAAGGCTCAATATTTGAATACTGAGGAATTCATCAATGCTGTGGCTGAGGAGTTGAGAGCAAGACTATCCCAGAAAGCAAAGTTGTAA

Network for GWHGAAZE004973

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0194

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00180.21	Iso_dh	2	321	2.90E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00031	IDH1, IDH2, icd	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Citrate cycle	map00020
		Carbon fixation pathways in prokaryotes	map00720
		Glutathione metabolism	map00480
		Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0006102	biological_process	isocitrate metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0004450	molecular_function	isocitrate dehydrogenase (NADP+) activity
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0000287	molecular_function	magnesium ion binding
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.221
	SRR3591706	second leaf	17.887
	SRR3591707	mature leaf	14.753
	SRR3591708	Shoot apex	24.306
	SRR3591709	Stem	22.530
	SRR3591710	White floral bud	22.876
	SRR3591711	White flower	34.444
	SRR3591712	Green floral bud	30.220
	SRR3591713	Yellow flower	34.588
SRP173429	SRR8316895	Juvenile bud stage	23.006
	SRR8316896	Juvenile bud stage	30.595
	SRR8316897	Juvenile bud stage	14.598
	SRR8316894	Third green stage	15.114
	SRR8316900	Third green stage	42.559
	SRR8316901	Third green stage	39.222
	SRR8316898	Complete white stage	17.024
	SRR8316899	Complete white stage	52.254
	SRR8316903	Complete white stage	23.855
	SRR8316902	Silver flowering stage	15.714
	SRR8316904	Silver flowering stage	18.388
	SRR8316905	Silver flowering stage	7.159
	SRR8316906	Gold flowering stage	31.457
	SRR8316907	Gold flowering stage	36.103
	SRR8316908	Gold flowering stage	34.554
SRP132670	SRR6706286	Control	56.562
	SRR6706287	Light intensity 50%	57.324
	SRR6706288	Light intensity 20%	61.383
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.736
	CNS0095593	Slightly white alabastrum(diploid) 2	40.880
	CNS0095594	Slightly white alabastrum(diploid) 3	29.285
	CNS0095595	Whole white alabastrum(diploid) 2	36.692
	CNS0095596	Whole white alabastrum(diploid) 3	33.499
	CNS0095597	Whole white alabastrum(diploid) 4	30.519
	CNS0095598	Silvery flower (diploied) 1	31.618
	CNS0095599	Silvery flower (diploied) 2	27.834
	CNS0095600	Silvery flower (diploied) 3	40.605
	CNS0095601	Golden flower (diploid) 1	27.305
	CNS0095602	Golden flower (diploid) 2	34.937
	CNS0095603	Golden flower (diploid) 3	32.231
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.914
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.611
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.322
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.244
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.914
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.078
	CNS0095610	Silvery flower (tetraploid) 1	51.529
	CNS0095611	Silvery flower (tetraploid) 2	48.422
	CNS0095612	Silvery flower (tetraploid) 3	48.515
	CNS0095613	Golden flower (tetraploid) 1	30.709
	CNS0095614	Golden flower (tetraploid) 2	37.872
	CNS0095615	Golden flower (tetraploid) 3	28.171
CRA001975	CRR073297	Stem 1	36.275
	CRR073298	Stem 2	33.071
	CRR073299	Stem 3	36.332
	CRR073300	Leaf 1	43.143
	CRR073301	Leaf 2	43.594
	CRR073302	Leaf 3	40.234
	CRR073303	Juvenile bud 1	43.380
	CRR073304	Juvenile bud 2	30.837
	CRR073305	Juvenile bud 3	37.207
	CRR073306	Third green 1	14.514
	CRR073307	Third green 2	12.647
	CRR073308	Third green 3	13.978
	CRR073309	Second white 1	23.049
	CRR073310	Second white 2	18.248
	CRR073311	Second white 3	12.693
	CRR073312	Silver flowering 1	7.991
	CRR073313	Silver flowering 2	10.368
	CRR073314	Silver flowering 3	12.174
	CRR073315	Gold flowering 1	19.996
	CRR073316	Gold flowering 2	25.305
	CRR073317	Gold flowering 3	14.187
	CRR073318	Tawny withering 1	24.781
	CRR073319	Tawny withering 2	28.748
	CRR073320	Tawny withering 3	29.533