Detail information of GWHGAAZE004976


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010645082.10PREDICTED: nuclear-pore anchor isoform X1 [Vitis vinifera]
Swissprottr|A4GSN8|NUA_ARATH2E-72Nuclear-pore anchor {ECO:0000303|PubMed:17513499, ECO:0000303|PubMed:21189294}
trEMBLtr|D7T103|D7T103_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI24130.3}
TAIR10AT1G79280.12E-53nuclear pore anchor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene633651644553-
GWHAAZE00000002mRNA633651644553-
GWHAAZE00000002exon633651633721-
GWHAAZE00000002exon633838633937-
GWHAAZE00000002exon634072635213-
GWHAAZE00000002exon635312635495-
GWHAAZE00000002exon640687640791-
GWHAAZE00000002exon641258641386-
GWHAAZE00000002exon641485641558-
GWHAAZE00000002exon641640641727-
GWHAAZE00000002exon641836641889-
GWHAAZE00000002exon641987642142-
GWHAAZE00000002exon642933643018-
GWHAAZE00000002exon643944644010-
GWHAAZE00000002exon644100644171-
GWHAAZE00000002exon644265644433-
GWHAAZE00000002exon644528644553-
GWHAAZE00000002CDS644528644553-
GWHAAZE00000002CDS644265644433-
GWHAAZE00000002CDS644100644171-
GWHAAZE00000002CDS643944644010-
GWHAAZE00000002CDS642933643018-
GWHAAZE00000002CDS641987642142-
GWHAAZE00000002CDS641836641889-
GWHAAZE00000002CDS641640641727-
GWHAAZE00000002CDS641485641558-
GWHAAZE00000002CDS641258641386-
GWHAAZE00000002CDS640687640791-
GWHAAZE00000002CDS635312635495-
GWHAAZE00000002CDS634072635213-
GWHAAZE00000002CDS633838633937-
GWHAAZE00000002CDS633651633721-
Transcript Sequence

Network for GWHGAAZE004976

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K09291TPR, MLP1, MLP2 RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf43.489
SRR3591706second leaf31.391
SRR3591707mature leaf35.887
SRR3591708Shoot apex45.336
SRR3591709Stem50.709
SRR3591710White floral bud49.757
SRR3591711White flower57.218
SRR3591712Green floral bud47.513
SRR3591713Yellow flower47.294
SRP173429 SRR8316895Juvenile bud stage 28.977
SRR8316896Juvenile bud stage 45.769
SRR8316897Juvenile bud stage 19.052
SRR8316894Third green stage 17.443
SRR8316900Third green stage 42.130
SRR8316901Third green stage 44.641
SRR8316898Complete white stage 8.230
SRR8316899Complete white stage 31.697
SRR8316903Complete white stage 28.443
SRR8316902Silver flowering stage19.189
SRR8316904Silver flowering stage30.369
SRR8316905Silver flowering stage13.710
SRR8316906Gold flowering stage 51.718
SRR8316907Gold flowering stage 54.366
SRR8316908Gold flowering stage 52.663
SRP132670SRR6706286Control37.354
SRR6706287Light intensity 50%39.408
SRR6706288Light intensity 20%40.579
CNP0000432CNS0095592Slightly white alabastrum(diploid) 131.342
CNS0095593Slightly white alabastrum(diploid) 231.871
CNS0095594Slightly white alabastrum(diploid) 335.474
CNS0095595Whole white alabastrum(diploid) 229.360
CNS0095596Whole white alabastrum(diploid) 324.494
CNS0095597Whole white alabastrum(diploid) 426.336
CNS0095598Silvery flower (diploied) 143.522
CNS0095599Silvery flower (diploied) 233.244
CNS0095600Silvery flower (diploied) 343.360
CNS0095601Golden flower (diploid) 136.143
CNS0095602Golden flower (diploid) 242.446
CNS0095603Golden flower (diploid) 342.743
CNS0095604Slightly white alabastrum(tetraploid) 137.255
CNS0095605Slightly white alabastrum(tetraploid) 230.880
CNS0095606Slightly white alabastrum(tetraploid) 362.677
CNS0095607Whole white alabastrum(tetraploid) 125.215
CNS0095608Whole white alabastrum(tetraploid) 219.090
CNS0095609Whole white alabastrum(tetraploid) 342.319
CNS0095610Silvery flower (tetraploid) 153.346
CNS0095611Silvery flower (tetraploid) 245.606
CNS0095612Silvery flower (tetraploid) 352.810
CNS0095613Golden flower (tetraploid) 132.710
CNS0095614Golden flower (tetraploid) 245.624
CNS0095615Golden flower (tetraploid) 345.992
CRA001975CRR073297Stem 156.123
CRR073298Stem 255.544
CRR073299Stem 336.057
CRR073300Leaf 157.416
CRR073301Leaf 252.239
CRR073302Leaf 326.938
CRR073303Juvenile bud 134.693
CRR073304Juvenile bud 219.540
CRR073305Juvenile bud 356.876
CRR073306Third green 120.767
CRR073307Third green 215.374
CRR073308Third green 320.595
CRR073309Second white 111.274
CRR073310Second white 221.396
CRR073311Second white 326.123
CRR073312Silver flowering 120.882
CRR073313Silver flowering 218.849
CRR073314Silver flowering 323.014
CRR073315Gold flowering 114.968
CRR073316Gold flowering 225.423
CRR073317Gold flowering 38.969
CRR073318Tawny withering 138.818
CRR073319Tawny withering 233.549
CRR073320Tawny withering 334.086