Detail information of GWHGAAZE004979


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010645083.11.1379E-128PREDICTED: nuclear-pore anchor isoform X2 [Vitis vinifera]
Swissprottr|A4GSN8|NUA_ARATH3E-98Nuclear-pore anchor {ECO:0000303|PubMed:17513499, ECO:0000303|PubMed:21189294}
trEMBLtr|D7T103|D7T103_VITVI5E-129Putative uncharacterized protein {ECO:0000313|EMBL:CBI24130.3}
TAIR10AT1G79280.12E-87nuclear pore anchor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene698176702184-
GWHAAZE00000002mRNA698176702184-
GWHAAZE00000002exon702101702184-
GWHAAZE00000002exon701899701947-
GWHAAZE00000002exon700471700574-
GWHAAZE00000002exon700295700363-
GWHAAZE00000002exon699843699986-
GWHAAZE00000002exon699622699726-
GWHAAZE00000002exon699396699509-
GWHAAZE00000002exon699207699285-
GWHAAZE00000002exon698324698367-
GWHAAZE00000002exon698176698253-
GWHAAZE00000002CDS702101702184-
GWHAAZE00000002CDS701899701947-
GWHAAZE00000002CDS700471700574-
GWHAAZE00000002CDS700295700363-
GWHAAZE00000002CDS699843699986-
GWHAAZE00000002CDS699622699726-
GWHAAZE00000002CDS699396699509-
GWHAAZE00000002CDS699207699285-
GWHAAZE00000002CDS698324698367-
GWHAAZE00000002CDS698176698253-
Transcript Sequence

Network for GWHGAAZE004979

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K09291TPR, MLP1, MLP2 RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.208
SRR3591706second leaf13.970
SRR3591707mature leaf21.494
SRR3591708Shoot apex13.753
SRR3591709Stem20.051
SRR3591710White floral bud21.273
SRR3591711White flower29.207
SRR3591712Green floral bud14.253
SRR3591713Yellow flower21.022
SRP173429 SRR8316895Juvenile bud stage 11.297
SRR8316896Juvenile bud stage 13.566
SRR8316897Juvenile bud stage 6.283
SRR8316894Third green stage 7.434
SRR8316900Third green stage 13.646
SRR8316901Third green stage 11.365
SRR8316898Complete white stage 3.061
SRR8316899Complete white stage 10.295
SRR8316903Complete white stage 13.455
SRR8316902Silver flowering stage6.871
SRR8316904Silver flowering stage16.160
SRR8316905Silver flowering stage7.107
SRR8316906Gold flowering stage 20.252
SRR8316907Gold flowering stage 13.527
SRR8316908Gold flowering stage 19.375
SRP132670SRR6706286Control19.607
SRR6706287Light intensity 50%23.358
SRR6706288Light intensity 20%24.853
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.705
CNS0095593Slightly white alabastrum(diploid) 22.360
CNS0095594Slightly white alabastrum(diploid) 32.784
CNS0095595Whole white alabastrum(diploid) 24.094
CNS0095596Whole white alabastrum(diploid) 31.750
CNS0095597Whole white alabastrum(diploid) 43.373
CNS0095598Silvery flower (diploied) 17.934
CNS0095599Silvery flower (diploied) 26.188
CNS0095600Silvery flower (diploied) 321.299
CNS0095601Golden flower (diploid) 14.470
CNS0095602Golden flower (diploid) 223.677
CNS0095603Golden flower (diploid) 324.042
CNS0095604Slightly white alabastrum(tetraploid) 14.307
CNS0095605Slightly white alabastrum(tetraploid) 24.369
CNS0095606Slightly white alabastrum(tetraploid) 320.275
CNS0095607Whole white alabastrum(tetraploid) 12.420
CNS0095608Whole white alabastrum(tetraploid) 22.909
CNS0095609Whole white alabastrum(tetraploid) 316.942
CNS0095610Silvery flower (tetraploid) 123.104
CNS0095611Silvery flower (tetraploid) 225.574
CNS0095612Silvery flower (tetraploid) 319.134
CNS0095613Golden flower (tetraploid) 15.218
CNS0095614Golden flower (tetraploid) 215.093
CNS0095615Golden flower (tetraploid) 329.212
CRA001975CRR073297Stem 124.171
CRR073298Stem 221.061
CRR073299Stem 317.009
CRR073300Leaf 122.319
CRR073301Leaf 217.832
CRR073302Leaf 312.028
CRR073303Juvenile bud 17.649
CRR073304Juvenile bud 27.385
CRR073305Juvenile bud 320.601
CRR073306Third green 19.760
CRR073307Third green 24.863
CRR073308Third green 310.581
CRR073309Second white 13.918
CRR073310Second white 212.277
CRR073311Second white 321.202
CRR073312Silver flowering 112.280
CRR073313Silver flowering 212.490
CRR073314Silver flowering 315.566
CRR073315Gold flowering 14.329
CRR073316Gold flowering 212.139
CRR073317Gold flowering 34.155
CRR073318Tawny withering 110.452
CRR073319Tawny withering 25.344
CRR073320Tawny withering 34.301