Gene detail

Detail information of GWHGAAZE005004

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010645104.1	PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X4 [Vitis vinifera]
Swissprot	tr\|Q39548\|KSB_CUCMA	Ent-kaur-16-ene synthase, chloroplastic (Precursor)
trEMBL	tr\|D7T123\|D7T123_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI24150.3}
TAIR10	AT1G79460.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	1077278	1083343	+
GWHAAZE00000002	mRNA	1077278	1083343	+
GWHAAZE00000002	exon	1077278	1077364	+
GWHAAZE00000002	exon	1077509	1077797	+
GWHAAZE00000002	exon	1077895	1078075	+
GWHAAZE00000002	exon	1079700	1079926	+
GWHAAZE00000002	exon	1080032	1080152	+
GWHAAZE00000002	exon	1080266	1080363	+
GWHAAZE00000002	exon	1080444	1080670	+
GWHAAZE00000002	exon	1080789	1080907	+
GWHAAZE00000002	exon	1081030	1081128	+
GWHAAZE00000002	exon	1081471	1081686	+
GWHAAZE00000002	exon	1081827	1081968	+
GWHAAZE00000002	exon	1082671	1082913	+
GWHAAZE00000002	exon	1083047	1083343	+
GWHAAZE00000002	CDS	1077278	1077364	+
GWHAAZE00000002	CDS	1077509	1077797	+
GWHAAZE00000002	CDS	1077895	1078075	+
GWHAAZE00000002	CDS	1079700	1079926	+
GWHAAZE00000002	CDS	1080032	1080152	+
GWHAAZE00000002	CDS	1080266	1080363	+
GWHAAZE00000002	CDS	1080444	1080670	+
GWHAAZE00000002	CDS	1080789	1080907	+
GWHAAZE00000002	CDS	1081030	1081128	+
GWHAAZE00000002	CDS	1081471	1081686	+
GWHAAZE00000002	CDS	1081827	1081968	+
GWHAAZE00000002	CDS	1082671	1082913	+
GWHAAZE00000002	CDS	1083047	1083343	+

Transcript Sequence
>GWHTAAZE005010 CTTGGCTTAATTTTCTCTATCTTTTCTTTTCAAACAGCTTCTCCCGATGCTGGAGTTAAAATAGCGACAGAGGCTAATACTGTCCTGAGCTCTGAAGGGATCAAAGAAAGAATTAGGAAATTGTTTAATAATAAGGTTGAACTTTCCGTTTCTTCGTATGACACCGCATGGGTAGCTATGGTTCCTTCTCCGCATTATTCGCTAGAGCCTTGTTTTCCGGAGTGTTTAGATTGGTTATTGGATAATCAGCTTGCCAATGGCTCATGGGGTCTGCCTCATCACAGTCCCTTATTACTCAAAGACACTCTTTCCTCTACTTTAGCATGTATCCTTGCACTCAAGCAATGGGGTGTTGGTGAAGACCATATTAACAAGGGTTTGCATTTTATGGAGTCGAATTTTCCTTCAGCTATCGATAAGAATCAACATTCGCCAACTGGATTTGACATCATATTTCCTGGTATGCTTGATTATGCTAAAGATCTAGATTTGAAGCTCCCTTTGGACCCAACAATTTTGAATGCAATGCTTCGTAACAAAGAGTTGGAGCTCAAGAGATGTTATGAAAGGCAGCCAGACGAGAAGGAAGCCTATTTGGCATATATCTCAGAAGGAATAGGGAAATTGCAAGACTGGGAAATGGTTATAAAGAAATACCAGAGGAAGAATGGGTCGCTCTTCAATTCACCAGCCACTACAGCTGCTGCTCTTACTCATCATCATCTTCAAGATGCTGGTTGTCTTAATTATATTCGCATGCTCTTAGACAAGTTTGGGAATGCAGTTCCAACAGTTTACCCTATAGATATATATGTACGCCTCTGCATGATTGACAATCTTGAAAGACTTGGAATTGATTGGCATTTTAGGGAGGAAATTCGAAGTGTGTTGGATGAAACGTACAGTTGTTGGCTGCAGGGGGATGAACATATATTTATGGATGTCGCGACTTGTGCAATAGCGTTTAGGGTACTACGGATAAATGGATATGACGTCTCTCCAGATCCTTTGACTCAAATTTCCAAGGAAGAGAGTTATTTTGATTCACTTGGTGGACATCCGAAGGGTATAAGTGATGCACTCGAATTGTATAGGGCGTCACAGTTGATTATGTCTCCAGATGATTTCGCTTTGAGAAAGCAAAACATACAATCGAGTCTTTTCCTCCAACAAACTTTATCTAATGGTTCAGTTTGCTCAGATGGACTTTCTAAATATATTAGCCAAGAGGTGGATGATGCTCTTAAGTTTCCGTTCTGTTCAAGTTTAGAGCGCATGGCCAGCAGGAGATATATAGAGCATTATAATGGAGATTGTAGTACTATAAGAGTCCTAAAGACTTCGTATCGTTCATCCAATATTGGCAACAAAGATTTGCTAAAGCTGGCAGTTGAAGATTTTAACATCTGCCAGTCCATACACCGTGAAGAAATCGAACAAGCTGAGAGGTGGGTGATAGAGAGCAGACTGGACAAGCTGAAGTTTGCGAGGCAGAGGACAGCATATTGTAGCTTCTCTGCAGCAGCAACCCTTTTTACACCTGAACTATCAGAGGCGCGTATGTCATGGACCAAAAATGCAGTGCTCACTACTGTGTTCGATGACTTTTTTGATGTTGGTGGTTCTGCAGAGGAACACCTCAACCTCGTTCACTTGGTTGAAAAATGGGATGTAGATATAGAGTCTGATTGCTGTTCTGAGAAAGTTCGGATACTTTTCTCAGCGCTTCACGGTGCAGTTAGTGAGATTGCACACCAAGCATTCGTACGTCAAGGTCGCGATGTGACTAGCCACTTAGTTGAGATTTGGTTGGATTTGCTGAAGGCTGCGTTGATAGAAGGTGGATGGTCTAGAAACAATATGCCAACCGTGGATGAATATCTGGAAAATGGTCATGTAACCTTCGCCTTGGGCCCAATTGTCATACCAGCAATGTATCTAGTGGGGCCAGAGTTCTCAGAGGAGGCTGCTCGAAGTTCTGAACTAAAAAGGCTATATACGCTTATGAGCAATTGTGGGCGCCTTCTCAATGATATCCAAACCTTCAAGAGGGAAACAGAGGAAGGTAAACTGAATGCGATATCGTTACGCATGATTCATAGTGGCGGAGCTACTACAAAAGAAGAGGCCATTGAAGAGACGATGAGGTTCATCAAAAGCCAGAGGGAAGAATTGCTGAATCTAGTAGTGAAGAAGGGGAGCATAGTACCGAGAGCTTGCAAGGAATTGTGTTGGAAAATGACAAAAGTGGCACATCTATTCTACCTCAAGGACGACGGTTTCACTTCCCAACACATGATGAAAGCTGTCAAGGATATTATTTATGAACCCATTGCATGCCCTTGA

Network for GWHGAAZE005004

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.22	Terpene_synth	211	414	2.10E-39
PF03936.17	Terpene_synth_C	460	723	9.00E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04121	E4.2.3.19	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.144
	SRR3591706	second leaf	1.751
	SRR3591707	mature leaf	1.272
	SRR3591708	Shoot apex	2.346
	SRR3591709	Stem	6.252
	SRR3591710	White floral bud	2.183
	SRR3591711	White flower	3.361
	SRR3591712	Green floral bud	2.924
	SRR3591713	Yellow flower	1.350
SRP173429	SRR8316895	Juvenile bud stage	3.791
	SRR8316896	Juvenile bud stage	5.052
	SRR8316897	Juvenile bud stage	1.188
	SRR8316894	Third green stage	0.879
	SRR8316900	Third green stage	1.248
	SRR8316901	Third green stage	1.423
	SRR8316898	Complete white stage	0.489
	SRR8316899	Complete white stage	0.526
	SRR8316903	Complete white stage	0.059
	SRR8316902	Silver flowering stage	0.087
	SRR8316904	Silver flowering stage	0.162
	SRR8316905	Silver flowering stage	0.308
	SRR8316906	Gold flowering stage	0.271
	SRR8316907	Gold flowering stage	0.133
	SRR8316908	Gold flowering stage	0.838
SRP132670	SRR6706286	Control	0.422
	SRR6706287	Light intensity 50%	0.493
	SRR6706288	Light intensity 20%	0.348
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.312
	CNS0095593	Slightly white alabastrum(diploid) 2	1.999
	CNS0095594	Slightly white alabastrum(diploid) 3	3.671
	CNS0095595	Whole white alabastrum(diploid) 2	0.867
	CNS0095596	Whole white alabastrum(diploid) 3	1.304
	CNS0095597	Whole white alabastrum(diploid) 4	0.460
	CNS0095598	Silvery flower (diploied) 1	0.034
	CNS0095599	Silvery flower (diploied) 2	0.206
	CNS0095600	Silvery flower (diploied) 3	0.035
	CNS0095601	Golden flower (diploid) 1	0.164
	CNS0095602	Golden flower (diploid) 2	0.195
	CNS0095603	Golden flower (diploid) 3	0.349
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.075
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.602
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.268
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.399
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.215
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.729
	CNS0095610	Silvery flower (tetraploid) 1	0.058
	CNS0095611	Silvery flower (tetraploid) 2	0.020
	CNS0095612	Silvery flower (tetraploid) 3	0.438
	CNS0095613	Golden flower (tetraploid) 1	0.134
	CNS0095614	Golden flower (tetraploid) 2	0.196
	CNS0095615	Golden flower (tetraploid) 3	0.045
CRA001975	CRR073297	Stem 1	2.597
	CRR073298	Stem 2	1.965
	CRR073299	Stem 3	0.866
	CRR073300	Leaf 1	0.614
	CRR073301	Leaf 2	0.712
	CRR073302	Leaf 3	0.646
	CRR073303	Juvenile bud 1	0.368
	CRR073304	Juvenile bud 2	0.307
	CRR073305	Juvenile bud 3	0.349
	CRR073306	Third green 1	0.018
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.040
	CRR073313	Silver flowering 2	0.028
	CRR073314	Silver flowering 3	0.181
	CRR073315	Gold flowering 1	0.198
	CRR073316	Gold flowering 2	0.281
	CRR073317	Gold flowering 3	0.395
	CRR073318	Tawny withering 1	19.778
	CRR073319	Tawny withering 2	37.502
	CRR073320	Tawny withering 3	2.365