Gene detail

Detail information of GWHGAAZE005005

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010645104.1	PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X4 [Vitis vinifera]
Swissprot	tr\|Q39548\|KSB_CUCMA	Ent-kaur-16-ene synthase, chloroplastic (Precursor)
trEMBL	tr\|D7T123\|D7T123_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI24150.3}
TAIR10	AT1G79460.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	1126400	1131906	+
GWHAAZE00000002	mRNA	1126400	1131906	+
GWHAAZE00000002	exon	1126400	1126432	+
GWHAAZE00000002	exon	1126867	1127014	+
GWHAAZE00000002	exon	1127308	1127357	+
GWHAAZE00000002	exon	1127502	1127629	+
GWHAAZE00000002	exon	1127694	1127785	+
GWHAAZE00000002	exon	1127883	1128021	+
GWHAAZE00000002	exon	1128609	1128835	+
GWHAAZE00000002	exon	1128941	1129061	+
GWHAAZE00000002	exon	1129175	1129272	+
GWHAAZE00000002	exon	1129368	1129594	+
GWHAAZE00000002	exon	1129706	1129824	+
GWHAAZE00000002	exon	1129948	1130046	+
GWHAAZE00000002	exon	1130142	1130357	+
GWHAAZE00000002	exon	1130481	1130622	+
GWHAAZE00000002	exon	1131193	1131438	+
GWHAAZE00000002	exon	1131580	1131906	+
GWHAAZE00000002	CDS	1126400	1126432	+
GWHAAZE00000002	CDS	1126867	1127014	+
GWHAAZE00000002	CDS	1127308	1127357	+
GWHAAZE00000002	CDS	1127502	1127629	+
GWHAAZE00000002	CDS	1127694	1127785	+
GWHAAZE00000002	CDS	1127883	1128021	+
GWHAAZE00000002	CDS	1128609	1128835	+
GWHAAZE00000002	CDS	1128941	1129061	+
GWHAAZE00000002	CDS	1129175	1129272	+
GWHAAZE00000002	CDS	1129368	1129594	+
GWHAAZE00000002	CDS	1129706	1129824	+
GWHAAZE00000002	CDS	1129948	1130046	+
GWHAAZE00000002	CDS	1130142	1130357	+
GWHAAZE00000002	CDS	1130481	1130622	+
GWHAAZE00000002	CDS	1131193	1131438	+
GWHAAZE00000002	CDS	1131580	1131906	+

Transcript Sequence
>GWHTAAZE005011 ATGACGAGATTCAACGTAGCGAGCACCACGAACCCTGGCATTAGGGTCGAGTTTGTACACGTTGTCATCACCTACTTCAACAAGCTCTTATGTGATTCTCTTCCTTTTGTTTTTCTCAAACTGTATTTGAAGTTCCAAATCCCAGGGTGCACTGTTGACGAGAACAGGCATGTCCATTCAGATTCTCCCGATGCTGGAGTTAAAATAGCGACAGAGGCTAATACTGTCCTGAGCTCTGAAGGGATCAAAGAAAGAATTAGGAAATTGTTTAATAATAAGGTTGAACTTTCCGCTTCAGATGACACATGGGTAGCTATGGTTCCTTCTCCGCATTATTCGCTAGAACCTTGTTTTCCAGATCCCTTATTACTCAAAGACACTCTTTCGTCTACTTTAGCATGTATCCTTGCACTCAAGCAATGGGGTGTTGGTGAAGACCATATTAACAAGGGTTTGCATTTTATGGAGTCGAATTTTCCTTCAGCTATCGATAAGAATCAACATTCGCCAACTGGATTTGACATCATATTTCCTGGTATGCTTGATTATGCTAAAGATCTAGATTTGAAGCTTCGGATCTCCAACCCGCGATGTTATGAAATGCAGCCAGAGGAGACGGAAGCCTATTTGGCATATGTTTCAGAAGGAATAGGGAAGTTGCAAGACTGGGAAATGGTGATAAAAAAATACCAGAGGAAGAATGGGTCGCTCTTCAATTCACCAGCCACTACAGCTGCTGCTCTTACTCATCATCATCTTCAAGATGCTGGCTGTCTTAATTATATTCGCTTGCTCTTAGACAAGTTTGGGAATGCAGTTCCAACAGTTTACCCTCTAGATATATACGCACGCCTCTGCATGATTGACAATCTTGAAAGACTTGGAATTGATTGGCATTTCAGGGAGGAAATTCGAAGTGTGTTGGATGAAACGTACAGCTGTTGGCTGCAGGGCGATGAACAGATATTTATGGATGTCGCGACTTGTGCAATAGCATTTCGGGTACTACGGATGAATGGATATGATGTCTCTGCAGATCCTTTGACTCAAATTACCAAGGAAGAGAGTTATTTCAATTCAGTGGGTGGACATTTGAAGGGCATAAGTGATGCACTCGAATTGTATAGGGCGTCACAGTTGATTATATCTCCAGATGAATCCGCTTTGAGAAAGCAAAACTTACAGTCCAGTCATTTCCTCAAACAAACTTTATCTGATGGTTCAGTTTGGTCAGATAAACTCTCTAAATATATTAGCCAAGAGATGGATGATGCTCTAAAGTTTCCCTTCTATTCAAGTTTAGAACGCATGGCCAACAGGAGAAATATAGAGCATTACAATGTAGACAGTAGTACTATCAGAGTCCTAAAGAGTTCATATTGTTCTTCTAATATTGGCAACAAAGATTTCCTAAAGCTGGCAATTGAAGATTTTAACATCTGCCAATCCATACACCGTGAAGAAATCGAACATCTTGAGAGGTGGGTGATAGAGAACAGATTGGACAAACTGAATTTTGCAAGGCAGAAGACTGAATATGCGAGCTTCTCTGCTGCAGCAACCATTTTCTCACCTGAACTATCAGATGCGCGCATGTCATGGGCCAAAAGTGCTGTGCTCACTACTGTGGTGGATGACTTTTTTGACGTTGGTGGTTCTGTTCAGGAACTGGTCAACCTCATTCAGTTGGTTGAAAAATGGGATGTAAATATAGAGTCCGATTGCTGTTCTGAGCAAGTTCGGATAGTTTTCTCAGCACTTCGCCGTGGAATTAGTGAGATTGCAGACCAAGCATTGATATGTCAAAGACGCAGTGTGACTAGCCACATAGTTGAGATTTGGTTGGATTTGCTGAAGTCAATGTTTAGAGAAGCTGAATGGTCAAGAGACGGATATGTGCCAACCATGGATGAATATATGGAAAATGGTTATGTATCCTTTGCCATAGGCCCAATTGTGCTTCCGGCACTGTATGTTGTGGGGCCAAAGCTCTCGGAGGAGGCAGCTAGAAGTTCTGAAGTAAACAAGCTTTTTAAGCTTATGAGCAATTGTGGGCGCCTACTCAATGATATCCAAAGCTTCAAGAGGGAATTGGAGGAAGGTAAACTGAATGCCATATCATTGCGAATGATCCATGGTGGTGGTGAAACTACAAAAGAAGAGGCTGTTAAAGAGGCGAGGAGGATTGTGGAAAGTCAGAAGGAACAATTGCTGAGGCTATTAGTGAAGGAGAAGGGGAGCATGGTACCGAGAGCTTGCAAGGAATTGTTTTGGAAAATGACAAAAGTGGTGCATCAGTTCTACATTGAGGACGACGGTTTTACTTCTGAAGACATGATGAAAGCTGTCAAGGATATTATTCATCGACCCATTGCATGCCATCTCGATGACGAATTTCCAACTATAAGTTAG

Network for GWHGAAZE005005

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.22	Terpene_synth	222	421	8.30E-41
PF03936.17	Terpene_synth_C	471	734	2.90E-76

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04121	E4.2.3.19	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.527
	SRR3591706	second leaf	1.579
	SRR3591707	mature leaf	1.419
	SRR3591708	Shoot apex	3.338
	SRR3591709	Stem	3.200
	SRR3591710	White floral bud	5.115
	SRR3591711	White flower	5.411
	SRR3591712	Green floral bud	8.994
	SRR3591713	Yellow flower	4.783
SRP173429	SRR8316895	Juvenile bud stage	2.855
	SRR8316896	Juvenile bud stage	2.579
	SRR8316897	Juvenile bud stage	1.729
	SRR8316894	Third green stage	1.292
	SRR8316900	Third green stage	3.315
	SRR8316901	Third green stage	3.284
	SRR8316898	Complete white stage	0.363
	SRR8316899	Complete white stage	3.274
	SRR8316903	Complete white stage	0.258
	SRR8316902	Silver flowering stage	0.826
	SRR8316904	Silver flowering stage	1.098
	SRR8316905	Silver flowering stage	0.425
	SRR8316906	Gold flowering stage	2.223
	SRR8316907	Gold flowering stage	3.131
	SRR8316908	Gold flowering stage	8.711
SRP132670	SRR6706286	Control	2.530
	SRR6706287	Light intensity 50%	2.546
	SRR6706288	Light intensity 20%	3.206
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.645
	CNS0095593	Slightly white alabastrum(diploid) 2	2.083
	CNS0095594	Slightly white alabastrum(diploid) 3	1.461
	CNS0095595	Whole white alabastrum(diploid) 2	1.594
	CNS0095596	Whole white alabastrum(diploid) 3	1.738
	CNS0095597	Whole white alabastrum(diploid) 4	1.444
	CNS0095598	Silvery flower (diploied) 1	0.519
	CNS0095599	Silvery flower (diploied) 2	1.144
	CNS0095600	Silvery flower (diploied) 3	0.605
	CNS0095601	Golden flower (diploid) 1	0.959
	CNS0095602	Golden flower (diploid) 2	0.719
	CNS0095603	Golden flower (diploid) 3	0.626
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.253
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.759
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.020
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.969
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.138
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.790
	CNS0095610	Silvery flower (tetraploid) 1	0.833
	CNS0095611	Silvery flower (tetraploid) 2	0.434
	CNS0095612	Silvery flower (tetraploid) 3	0.578
	CNS0095613	Golden flower (tetraploid) 1	2.028
	CNS0095614	Golden flower (tetraploid) 2	1.506
	CNS0095615	Golden flower (tetraploid) 3	0.908
CRA001975	CRR073297	Stem 1	4.376
	CRR073298	Stem 2	4.159
	CRR073299	Stem 3	2.868
	CRR073300	Leaf 1	4.899
	CRR073301	Leaf 2	2.684
	CRR073302	Leaf 3	2.610
	CRR073303	Juvenile bud 1	4.468
	CRR073304	Juvenile bud 2	1.530
	CRR073305	Juvenile bud 3	2.532
	CRR073306	Third green 1	0.184
	CRR073307	Third green 2	0.173
	CRR073308	Third green 3	0.104
	CRR073309	Second white 1	0.275
	CRR073310	Second white 2	0.153
	CRR073311	Second white 3	0.155
	CRR073312	Silver flowering 1	0.394
	CRR073313	Silver flowering 2	0.898
	CRR073314	Silver flowering 3	0.986
	CRR073315	Gold flowering 1	0.412
	CRR073316	Gold flowering 2	1.082
	CRR073317	Gold flowering 3	0.320
	CRR073318	Tawny withering 1	0.474
	CRR073319	Tawny withering 2	0.594
	CRR073320	Tawny withering 3	0.477