Gene detail

Detail information of GWHGAAZE005007

Functional Annotation

Database	Orthologs	Annotation
Nr	AGE10589.1	phenylalanine amononia-lyase [Lonicera japonica]
Swissprot	tr\|P45726\|PALY_CAMSI	Phenylalanine ammonia-lyase
trEMBL	tr\|L7Z3F2\|L7Z3F2_LONJA	Phenylalanine ammonia-lyase {ECO:0000256\|RuleBase:RU003955}
TAIR10	AT3G53260.1	phenylalanine ammonia-lyase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	1158473	1169588	+
GWHAAZE00000002	mRNA	1158473	1169588	+
GWHAAZE00000002	exon	1158473	1158692	+
GWHAAZE00000002	exon	1158789	1158879	+
GWHAAZE00000002	exon	1167839	1169588	+
GWHAAZE00000002	CDS	1158473	1158692	+
GWHAAZE00000002	CDS	1158789	1158879	+
GWHAAZE00000002	CDS	1167839	1169588	+

Transcript Sequence
>GWHTAAZE005013 ATGGACACAGAAATGGAGAATGGACACAGAAATGACGGGGTCGTTTCGGAATTGTGCGTGAAGGATCTGTTGAATTGGGGTGTGGCGGCGGAGGGAATGAAGGGGAGCCATTTGGATGAGGTGAAGAGGATGGTGGCGGAGTTTAGGAATCCGGTAGTGAAGCTCGGCGGCGAGGGGCTCACGATTTCTCAGGTGGCGGCCATCTCTTCTGCAGGAGGAGGGACAGACAGTTACGGTGTTACTACTGGTTTTGGTGCTACTTCTCATCGGAGGACTAAACAAGGCGGTGCTCTTCAAAAGGAGCTTATTAGGTTCTTGAATTCTGGAATATTTGGCCATGGAACAGAATCATCCCACACACTACCACACTCAGCAACTAGAGCAGCCATGTTAGTGAGGGTCAACACCCTCCTCCAAGGCTACTCTGGCATCCGTTTCGAAATCCTCGAAGCCATCACGAAATTCCTCAACCACAATGTCACTCCGTGTTTGCCCCTACGTGGCACAATCACGGCCTCCGGAGATCTTGTCCCCTTATCCTACATTGCCGGACTTCTCACTGGCTGCCCCAATTCGAAGGCAGTCGGACCCGCTGGAGAAATCCTCACTGCCGAAGCAGCCTTCGGCCTTGCTGGAGTCACTGGCGGATTTTTCGAGTTCCAGCCCAAGGAAGGCTTTGCACTTGTTAATAGCACAGCTGTTGGCTCTGGCCTGGCCTCTATGGTTCTATTTGAGGCCAACATTCTTGCCCTTTTATCTGAAGTCCTATCAGCTATCTTTGCGGAAGTTATGCAAGGAAAGCCCGAGTTTACCGACCATTTGACGCACAAATTAAAGCACCACCCGGGCCAGATTGAGGCTGCAGCAATAATGGAACACATTTTAGACGGAAGCTCCTATGTTAAGGCCGCTGAAAAACTTCACGAGATGGACCCCTTGCAAAAGCCCAAACGAGATCGCTACGCCCTCCGAACATCACCACAATGGCTCGGCCCACAAATCGAGGTGATCCGATCATCGACAAAGATGATTGAGAGGGAGATAAATTCGGTGAATGATAACCCATTGATCGATGTTTCGAGGAACAAGGCCTTGCATGGTGGCAACTTTCAAGGCACCCCAATTGGAGTCTCTATGGATAACACCAGATTAGCCATTGCCGCAATTGGAAAACTCATGTTTGCCCAATTTTCGGAGCTTGTGAATGATTTTCACAACAATGGGTTGCCTTCTAATCTCTCCGGTGGACCTAATCCAAGCTTGGACTATGGCTTCAAAGGTGCCGAGATCGCCATGGCTTCATATTGTTCTGAACTTCAATTTTTGGCCAATCCAGTCACTAACCACGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCATTGGGCTTAATCTCTTCTCGAAAAACAGCCGAGGCTGTTGATATCTTGAAGCTAATGTCATCCACATATCTAGTAGGTCTATGCCAGGCCATAGACTTGAGGCATTTGGAGGAGAACTTACGGACCACAGTAAAGAACACCGTGAGCCTAGTGGCTAAGCATGTCTTGACCATGGGTGCCAACCGTGAACTCCACCCCTCAAGCTTCTGCGAGAAGGATTTGCTTAGAGTGGTGGACCGCGAGTACGTGTTCGCCTACATTGATGACCCCTGCAGTGCTACCTACCCGTTGATGGAAAAACTAAGGCAAGTTCTGGTTGAACAAGCATTGAAAAACGAAGTCAAGGAGAAGAATGTGAGCACTTCCGTCTTCCAAAAGATCGGAGCTTTCGAGGAAGAATTGAAAGCACTTTTGCCAAAAGAGGTGGAGAGTACACGGGCTTTGATTGAGAGTGGGAATGGTGGAATTGGTAACGGGATAAAGGATTGTCGGTCTTACCCATTGTACAAGTTTGTGAGGGAAGAACTTGGGGCAGAGTTGCTGACCGGAGAGAAGGTTCGGTCACCGGGGGAGGAGTTTGATAAAGTGTTCATGGCAATGTGCGAGGGAAAGATAATTGATCCATTGTTGGATTGTCTCAAGAGTTGGAATGGTATTCCTCTGCCAATCTGTTAG

Network for GWHGAAZE005007

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00221.20	Lyase_aromatic	72	505	3.30E-139

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10775	PAL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylalanine metabolism	map00360
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006559	biological_process	L-phenylalanine catabolic process
GO:0005737	cellular_component	cytoplasm
GO:0016841	molecular_function	ammonia-lyase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.585
	SRR3591706	second leaf	8.418
	SRR3591707	mature leaf	8.991
	SRR3591708	Shoot apex	9.396
	SRR3591709	Stem	7.917
	SRR3591710	White floral bud	8.967
	SRR3591711	White flower	7.272
	SRR3591712	Green floral bud	8.567
	SRR3591713	Yellow flower	7.713
SRP173429	SRR8316895	Juvenile bud stage	9.044
	SRR8316896	Juvenile bud stage	12.243
	SRR8316897	Juvenile bud stage	4.265
	SRR8316894	Third green stage	4.791
	SRR8316900	Third green stage	13.046
	SRR8316901	Third green stage	12.840
	SRR8316898	Complete white stage	4.075
	SRR8316899	Complete white stage	10.840
	SRR8316903	Complete white stage	7.117
	SRR8316902	Silver flowering stage	3.267
	SRR8316904	Silver flowering stage	5.184
	SRR8316905	Silver flowering stage	2.551
	SRR8316906	Gold flowering stage	15.862
	SRR8316907	Gold flowering stage	9.690
	SRR8316908	Gold flowering stage	19.744
SRP132670	SRR6706286	Control	18.971
	SRR6706287	Light intensity 50%	18.426
	SRR6706288	Light intensity 20%	18.390
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.767
	CNS0095593	Slightly white alabastrum(diploid) 2	5.988
	CNS0095594	Slightly white alabastrum(diploid) 3	6.966
	CNS0095595	Whole white alabastrum(diploid) 2	5.327
	CNS0095596	Whole white alabastrum(diploid) 3	5.312
	CNS0095597	Whole white alabastrum(diploid) 4	5.445
	CNS0095598	Silvery flower (diploied) 1	5.905
	CNS0095599	Silvery flower (diploied) 2	5.546
	CNS0095600	Silvery flower (diploied) 3	5.574
	CNS0095601	Golden flower (diploid) 1	6.675
	CNS0095602	Golden flower (diploid) 2	9.517
	CNS0095603	Golden flower (diploid) 3	7.993
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.656
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.663
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.024
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.009
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.175
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.393
	CNS0095610	Silvery flower (tetraploid) 1	6.095
	CNS0095611	Silvery flower (tetraploid) 2	7.146
	CNS0095612	Silvery flower (tetraploid) 3	3.942
	CNS0095613	Golden flower (tetraploid) 1	6.368
	CNS0095614	Golden flower (tetraploid) 2	9.543
	CNS0095615	Golden flower (tetraploid) 3	6.688
CRA001975	CRR073297	Stem 1	17.042
	CRR073298	Stem 2	14.494
	CRR073299	Stem 3	14.960
	CRR073300	Leaf 1	15.036
	CRR073301	Leaf 2	15.818
	CRR073302	Leaf 3	13.080
	CRR073303	Juvenile bud 1	11.445
	CRR073304	Juvenile bud 2	9.284
	CRR073305	Juvenile bud 3	13.954
	CRR073306	Third green 1	2.860
	CRR073307	Third green 2	3.206
	CRR073308	Third green 3	3.374
	CRR073309	Second white 1	3.761
	CRR073310	Second white 2	4.034
	CRR073311	Second white 3	4.099
	CRR073312	Silver flowering 1	9.457
	CRR073313	Silver flowering 2	11.550
	CRR073314	Silver flowering 3	14.202
	CRR073315	Gold flowering 1	16.230
	CRR073316	Gold flowering 2	19.557
	CRR073317	Gold flowering 3	17.426
	CRR073318	Tawny withering 1	32.414
	CRR073319	Tawny withering 2	31.414
	CRR073320	Tawny withering 3	16.996