Detail information of GWHGAAZE005022


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004248287.11.80779E-73PREDICTED: nuclear cap-binding protein subunit 1 [Solanum lycopersicum]
Swissprottr|Q9SIU2|NCBP1_ARATH6E-53Nuclear cap-binding protein subunit 1
trEMBLtr|K4CX85|K4CX85_SOLLC7E-74Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc10g005530.2.1}
TAIR10AT2G13540.18E-47ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene14162471421512-
GWHAAZE00000002mRNA14162471421512-
GWHAAZE00000002exon14162471416315-
GWHAAZE00000002exon14175021417612-
GWHAAZE00000002exon14184641418663-
GWHAAZE00000002exon14190201419086-
GWHAAZE00000002exon14199251419987-
GWHAAZE00000002exon14213751421512-
GWHAAZE00000002CDS14213751421512-
GWHAAZE00000002CDS14199251419987-
GWHAAZE00000002CDS14190201419086-
GWHAAZE00000002CDS14184641418663-
GWHAAZE00000002CDS14175021417612-
GWHAAZE00000002CDS14162471416315-
Transcript Sequence

Network for GWHGAAZE005022

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12882NCBP1, CBP80 Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.801
SRR3591706second leaf15.860
SRR3591707mature leaf11.759
SRR3591708Shoot apex28.745
SRR3591709Stem11.728
SRR3591710White floral bud18.717
SRR3591711White flower19.315
SRR3591712Green floral bud17.505
SRR3591713Yellow flower18.369
SRP173429 SRR8316895Juvenile bud stage 9.977
SRR8316896Juvenile bud stage 13.524
SRR8316897Juvenile bud stage 9.347
SRR8316894Third green stage 8.565
SRR8316900Third green stage 20.909
SRR8316901Third green stage 16.753
SRR8316898Complete white stage 8.306
SRR8316899Complete white stage 18.073
SRR8316903Complete white stage 12.320
SRR8316902Silver flowering stage8.351
SRR8316904Silver flowering stage11.441
SRR8316905Silver flowering stage4.837
SRR8316906Gold flowering stage 16.827
SRR8316907Gold flowering stage 15.953
SRR8316908Gold flowering stage 19.164
SRP132670SRR6706286Control18.021
SRR6706287Light intensity 50%22.396
SRR6706288Light intensity 20%21.289
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.872
CNS0095593Slightly white alabastrum(diploid) 25.776
CNS0095594Slightly white alabastrum(diploid) 37.455
CNS0095595Whole white alabastrum(diploid) 26.860
CNS0095596Whole white alabastrum(diploid) 35.695
CNS0095597Whole white alabastrum(diploid) 45.917
CNS0095598Silvery flower (diploied) 17.635
CNS0095599Silvery flower (diploied) 27.282
CNS0095600Silvery flower (diploied) 317.762
CNS0095601Golden flower (diploid) 18.460
CNS0095602Golden flower (diploid) 217.010
CNS0095603Golden flower (diploid) 319.222
CNS0095604Slightly white alabastrum(tetraploid) 19.041
CNS0095605Slightly white alabastrum(tetraploid) 25.116
CNS0095606Slightly white alabastrum(tetraploid) 319.803
CNS0095607Whole white alabastrum(tetraploid) 15.794
CNS0095608Whole white alabastrum(tetraploid) 25.265
CNS0095609Whole white alabastrum(tetraploid) 317.110
CNS0095610Silvery flower (tetraploid) 122.899
CNS0095611Silvery flower (tetraploid) 222.529
CNS0095612Silvery flower (tetraploid) 319.032
CNS0095613Golden flower (tetraploid) 16.970
CNS0095614Golden flower (tetraploid) 217.778
CNS0095615Golden flower (tetraploid) 314.655
CRA001975CRR073297Stem 123.230
CRR073298Stem 221.165
CRR073299Stem 322.952
CRR073300Leaf 122.958
CRR073301Leaf 223.131
CRR073302Leaf 321.180
CRR073303Juvenile bud 114.759
CRR073304Juvenile bud 218.234
CRR073305Juvenile bud 321.301
CRR073306Third green 16.047
CRR073307Third green 23.050
CRR073308Third green 39.856
CRR073309Second white 113.893
CRR073310Second white 211.308
CRR073311Second white 315.429
CRR073312Silver flowering 110.545
CRR073313Silver flowering 214.048
CRR073314Silver flowering 313.979
CRR073315Gold flowering 111.255
CRR073316Gold flowering 218.737
CRR073317Gold flowering 313.727
CRR073318Tawny withering 113.138
CRR073319Tawny withering 29.866
CRR073320Tawny withering 39.330