Detail information of GWHGAAZE005034


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007009864.10Zinc finger (C3HC4-type RING finger) family protein [Theobroma cacao]
trEMBLtr|A0A061FV73|A0A061FV73_THECC0Zinc finger (C3HC4-type RING finger) family protein {ECO:0000313|EMBL:EOY18674.1}
TAIR10AT2G38970.10Zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene16058181609677-
GWHAAZE00000002mRNA16058181609677-
GWHAAZE00000002exon16058181607776-
GWHAAZE00000002exon16094111609677-
GWHAAZE00000002CDS16094111609677-
GWHAAZE00000002CDS16058181607776-
Transcript Sequence

Network for GWHGAAZE005034

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17123.6zf-RING_11921211.00E-09
PF00092.29VWA2924768.90E-24
PF14624.7Vwaint6437154.60E-22
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.282
SRR3591706second leaf13.721
SRR3591707mature leaf11.783
SRR3591708Shoot apex11.734
SRR3591709Stem17.865
SRR3591710White floral bud7.208
SRR3591711White flower6.165
SRR3591712Green floral bud5.087
SRR3591713Yellow flower9.009
SRP173429 SRR8316895Juvenile bud stage 4.099
SRR8316896Juvenile bud stage 2.356
SRR8316897Juvenile bud stage 2.587
SRR8316894Third green stage 1.500
SRR8316900Third green stage 2.312
SRR8316901Third green stage 2.954
SRR8316898Complete white stage 0.169
SRR8316899Complete white stage 5.971
SRR8316903Complete white stage 1.205
SRR8316902Silver flowering stage1.555
SRR8316904Silver flowering stage1.480
SRR8316905Silver flowering stage0.658
SRR8316906Gold flowering stage 9.651
SRR8316907Gold flowering stage 7.409
SRR8316908Gold flowering stage 19.364
SRP132670SRR6706286Control3.628
SRR6706287Light intensity 50%3.848
SRR6706288Light intensity 20%3.604
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.856
CNS0095593Slightly white alabastrum(diploid) 22.936
CNS0095594Slightly white alabastrum(diploid) 33.314
CNS0095595Whole white alabastrum(diploid) 23.117
CNS0095596Whole white alabastrum(diploid) 31.744
CNS0095597Whole white alabastrum(diploid) 43.030
CNS0095598Silvery flower (diploied) 16.683
CNS0095599Silvery flower (diploied) 29.290
CNS0095600Silvery flower (diploied) 33.176
CNS0095601Golden flower (diploid) 15.968
CNS0095602Golden flower (diploid) 27.915
CNS0095603Golden flower (diploid) 37.662
CNS0095604Slightly white alabastrum(tetraploid) 12.788
CNS0095605Slightly white alabastrum(tetraploid) 22.195
CNS0095606Slightly white alabastrum(tetraploid) 37.501
CNS0095607Whole white alabastrum(tetraploid) 13.988
CNS0095608Whole white alabastrum(tetraploid) 21.062
CNS0095609Whole white alabastrum(tetraploid) 32.107
CNS0095610Silvery flower (tetraploid) 11.229
CNS0095611Silvery flower (tetraploid) 21.959
CNS0095612Silvery flower (tetraploid) 31.697
CNS0095613Golden flower (tetraploid) 12.447
CNS0095614Golden flower (tetraploid) 22.939
CNS0095615Golden flower (tetraploid) 32.276
CRA001975CRR073297Stem 110.101
CRR073298Stem 28.594
CRR073299Stem 38.793
CRR073300Leaf 15.256
CRR073301Leaf 25.107
CRR073302Leaf 34.344
CRR073303Juvenile bud 13.607
CRR073304Juvenile bud 24.436
CRR073305Juvenile bud 37.769
CRR073306Third green 11.856
CRR073307Third green 21.300
CRR073308Third green 32.249
CRR073309Second white 13.263
CRR073310Second white 23.891
CRR073311Second white 33.416
CRR073312Silver flowering 126.760
CRR073313Silver flowering 229.450
CRR073314Silver flowering 329.472
CRR073315Gold flowering 18.994
CRR073316Gold flowering 220.701
CRR073317Gold flowering 320.268
CRR073318Tawny withering 131.892
CRR073319Tawny withering 224.487
CRR073320Tawny withering 336.250