Gene detail

Detail information of GWHGAAZE005037

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010658392.1	PREDICTED: probable lysine-specific demethylase ELF6 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q6BDA0\|ELF6_ARATH	Probable lysine-specific demethylase ELF6
trEMBL	tr\|A0A068TU52\|A0A068TU52_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDO99756.1}
TAIR10	AT5G04240.1	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	1680897	1688389	-
GWHAAZE00000002	mRNA	1680897	1688389	-
GWHAAZE00000002	exon	1680897	1682779	-
GWHAAZE00000002	exon	1683059	1683457	-
GWHAAZE00000002	exon	1683939	1684546	-
GWHAAZE00000002	exon	1685111	1685261	-
GWHAAZE00000002	exon	1685859	1685926	-
GWHAAZE00000002	exon	1686096	1686174	-
GWHAAZE00000002	exon	1687231	1688389	-
GWHAAZE00000002	CDS	1687231	1688389	-
GWHAAZE00000002	CDS	1686096	1686174	-
GWHAAZE00000002	CDS	1685859	1685926	-
GWHAAZE00000002	CDS	1685111	1685261	-
GWHAAZE00000002	CDS	1683939	1684546	-
GWHAAZE00000002	CDS	1683059	1683457	-
GWHAAZE00000002	CDS	1680897	1682779	-

Transcript Sequence
>GWHTAAZE005043 ATGAGGGATGTGGAAATACCCAATTGGCTCAAAGGGTTGCCATTGGCCCCCGAATTCCACCCAACCGATACTGAATTTGCAGACCCTATTGCTTATATATCCAAAATTGAGAAAGAAGCTAGTGCTTTTGGGATATGCAAAGTAATCCCGCCATTCCCCAAACCAACAAAAAGATATGTTCTTTCAAACCTAAATAATTCTCTCTCCAAGTGTCCGGAATTGGGTTCGGATTCGAGTTCTTCATCGAAAACGCATAATGGGGATAAAGTAAATGGCGGGGAGATTCGAGCGGTATTTACAACTAGGCATCAAGAATTGGGACAGAGCGGAAAAAGATCAAAGGGGGCAATTCATCCCCAGCCACCCCCTGCTCATAAGCAAGTATGGCAAAGTGGGGAAATTTATACATTGGAGCAGTTTGAATCCAAGTCCAAGACATTCACTAAGACTCATTTGGGTATGGTTAAGGAAGTTTCACCATTAGTAATAGAGACATTGTTTTGGCAGGCAGCTCTTGAGAAGCCTATATACATTGAGTATGCCAATGATGTACCAGGGTCTGGTTTTGCAGAACCAGAGGGCCCATTTCGTAATTTTCATCGACGTAGGAGGAGGAGGAAGACATTCAGTCGTAACAGTCCTGTTGGTTCTAATAGCAAGAAAGACCTAGCAGATACTTTGAGTGATGATGGTGAGAAGAAAGGTGCATCTGCCAGTTCTGATCCTAGTTCTTCTGAAATGTCTAAGGCAAATCTTCCCCCTTCATCCAATATGTTGTCTGATCTAACTTCTTCACGGCCTTCTAGGCAAAAGAGTTCAAATGCTGGTAATGAGATGGAAAGGACTTCTGGTTGGAAGCTCTCAAACAGTCCATGGAATTTACAAGTGATTGCACGGGCACCTGGATCACTTACGCGGTTCATGCCTGATGATATACCAGGTGTTACTTCACCCATGGTCTATATTGGTATGTTGTTCAGTTGGTTTGCTTGGCATGTTGAAGATCACGAGCTTCACAGCTTAAATTTCCTTCACACTGGTTCTCAGAAGACTTGGTATGCAGTACCAGGGGATTATGCATTCACTTTTGAGGAAACCATTCGTAAACGGGCTTATGGAGGAAACATTGACCGGTTAGGTACGCAAGATGCTAACGCTTCTGCTCTAACACTCTTGGGAGAGAAGACTACTCTTCTATCACCTGAAGTTATTGTTGCGTCTGGTATTCCATGTTGCAGGTTAGTGCAGAACCCTGGTGAATTTGTAGTGACTTTTCCAAGGGCTTACCATGTAGGATTCAGCCATGGTTTTAATTGTGGGGAAGCGGCTAACTTTGGAACTCCAAAGTGGCTAACAGTAGCCAAGGAAGCCGCAGTGCGTAGAGCTGCCATGAATTATCTTCCCATGCTTTCCCATCAGCAGCTCCTATACTTGTTGACCATGTCTTTTATTTCAAGTATCACAAGTTTGATATGCTGCAATTGTGTGCATAACAGAGTGCCTAGAGCCTTACTGCCAGGGGTACGAAGCTCTCGTCTGAGAGATCGTCAGAAGGAGGAACGAGAGATGTTGGTGAAGAAAGCTTTTATAGAAGATATCTTAAATGAAAACAATCTGTTAAGCACTCTTCTTCGAAAAAATTCCTCATACCATGGAGTATTGTGGGATCTGGAATCATTGCAATCGTCCATTAAAGAATCCGGCTTGTGCAGCAGCATTGCTACGATTGATACAACACCTATAGAAAATAAGTATTCTGAGAAAAATAATAATCAGGACCTATATAGCGAGATGAGCTTGTATATGGAAAGTGCGAACAATTTGTATGTGGAAGATGATGATTTGTCATTTTGTTTTCAAGTTGACACAGGAACATTACCTTGTGTGGCTTGTGGGGTTCTTGGTTTCCCCTTCATGTCTATTGTGCAACCATCTGAGAGAGCATCAAAGGAACTTCTACCTGCAGAGCAAAATCACATGGTTTTAGATTTAGTGGTTGTAAATCCTGTACCGTCTCATCCGCCGCCAGAACTCCATTGCATGGTGGAGGGCTCCATTGTTTCAGATGGAGAAAGGGGCCAGGATAAAGTGAGTACGGGCAAAATATCTTCATCATGTGAGTTGCCAATCAAAACCACAAAGTCTGGGATAAAATTGAAGTTCAAGAACTGTGGAAAAACCCATGTTGATGCTAGCAGTATCTGTTTGGAGGCATCTGACAGGACGATACCAACTGAGAGCAATTTTATTCACCATCCAAATGATCAGTCTCAGGTTCCTGGTCCCAATTTCTTACTCCCCACAAAGGAGGTACCAGTTTCTTCAGAAGTGACGGTTGACAAAGTGTGGAACACTTCTAGTGGGAATCTAAGACCGCGGATATTCTGTCTGGAACATGCAATTCAAATTGAAGAGATGCTGCAGTCTAAGGGTGGAGCAAATGTGCTTTTGATTTGCCATTCCGATTTTCAAAAAATAAAGGCACATGCTGCAACAGTTGCTGAGGAAATTGGTAGCAGTTTCAGTTATAAAGAGATTCCACTGTATGACGCATCCAAGGAAGACCTGAACTTGATCAATCTTGCAATCGAAAGTGAAGAGAAAGATGAATGCGATGAAGACTGGACATCTAAACTGAATATTAACATGCGGCACCGTGTCAAGCTCAGAGAAGTTTTTCCAACTGAGAAAGAACAGCAGCATGCCTTGACGCTATGTGGGTTGTTCTCAGATACAACACCTAGTTCAAGTGCCTTAAGCCTTGAGTGGAAATCCAAAAAATTTCGCTCAAGACGGAACTCAAATCATTCAGATGATAGCAAGGCCTTTGAAAGCATTCCACATGAAAAAGAAGAAGTGTCGGGAGCAAAGCCGGATGTGCCTTTGGGCAGAAAAGAAGATAAAATCATTCAATATTCGAGAAGAAACTTCAAGTCTAAGCGTCCTGGTTCTGCGGGTGCAAGTAAAGGCCCTGGAGATGCTTGTAAACTCTTACCAGAAGAACCTTCAGCTGTTTGTTCTGCAGATCGTAATGAAAATAGCAGAAACACAACTGAAACTTGTACTGGGAAATGTGAAATGCAGCATGAACATCATGGGCTTGTTAAAACCTGGGATCAAACTGAGAATTCTGTTCAATCTCAAGTTGCAGATCCATGCATTGCTGTCAATCCAGTGATTGAAATCGACGCGCAAATGGGAAACCACATGTTGGATGAAGCGTTCATGAAGGATGATAAAATATGTGATTCAACACAGGATGATTTTCAGTTGCAGCACGAGGATGAGGTTACCGAGGATATTAGAGAGAAAACAGACGTATGCTGTTCTGAAATTTCTGGGGGTTCACCTGCAGTTACAGCCCAAGTTACAGAAAATATTGAAATTGAGAGAGAGAATCAAATTGCAGAGGAAATTAGCATGACGAGTGAGACTTGTGATGTGGTGGTAACTATGCATGATTTTGAAGGGCGCTCAGAAGATGTTTCAGTGGAAGAGGTCTTTGATCATGCTAACTCCACCAGCCTAGATGCTGATGAAACTGCTGTGGGAAATTTTGACGATCCAATGGATAAAACAGTTCAGGAGGCGAATGAAAGAAAGAGCAATAACGAACACGGTTCGGATGACGGTACACTGATAAATAAGGCTACGTCTGTCTCAGTAGAAGAAAGTCTCGAAGTTGAGAGGGAGAGCGATACTGCTGAGGAAATGCAGAGTGGTGGTGAGAATTGCTTTTTATTGGAAAAGAGAAAGCCAGATAGAAGCAAAAGAAAAAGAGAAGTTGAGCTTCAAACAGAGGATCAATCTGGTGGTTTCGACGGTTTTATTAAGAGTCCATGTGAAGGTTTGAGGCCAAGGGCTGGAAAAGATGCAACACCTAGAAGTGGAACTGACAAGAAGAGAGCAGTAGAGGATAAACCGGCCATGAAGAAGTCAAGGAATCGTTTAGTACCTCCAAAGGATAAGAAAGAAAACAGAAAGGGGTCTTGTCCTCACGGTTGTGACATAGAAGGCTGCAGACTGAAGTTCAAAACGAAAGCGGAGCTAGGCTTGCACAAACGGAATAGGTGCCCGCACGAAGGGTGTGGTAAGAAGTTCAGATCGCACAAATACGCAGTGCTTCACTTACGCGTACACAATGATGATAGGCCGCTGAAATGCCCGTGGAAGGGTTGCAAGATGTCGTTCAAGTGGGCGTGGGCTAGGACTGAGCATCTAAGGGTGCACACGGGAGAGAGACCTTACCAGTGTAAGGTGGAGGGATGCGGGCTTACTTTCAGGTTTGTATCGGATTACAGTAGGCATAGACGGAAAACTGGGCATTATGTCAATATACCAAACTGA

Network for GWHGAAZE005037

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02375.18	JmjN	17	50	2.40E-14
PF02373.23	JmjC	319	445	1.60E-35

Protein Sequence

>GWHPAAZE005040
MRDVEIPNWLKGLPLAPEFHPTDTEFADPIAYISKIEKEASAFGICKVIPPFPKPTKRYVLSNLNNSLSKCPELGSDSSSSSKTHNGDKVNGGEIRAVFTTRHQELGQSGKRSKGAIHPQPPPAHKQVWQSGEIYTLEQFESKSKTFTKTHLGMVKEVSPLVIETLFWQAALEKPIYIEYANDVPGSGFAEPEGPFRNFHRRRRRRKTFSRNSPVGSNSKKDLADTLSDDGEKKGASASSDPSSSEMSKANLPPSSNMLSDLTSSRPSRQKSSNAGNEMERTSGWKLSNSPWNLQVIARAPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGSQKTWYAVPGDYAFTFEETIRKRAYGGNIDRLGTQDANASALTLLGEKTTLLSPEVIVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPKWLTVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISSITSLICCNCVHNRVPRALLPGVRSSRLRDRQKEEREMLVKKAFIEDILNENNLLSTLLRKNSSYHGVLWDLESLQSSIKESGLCSSIATIDTTPIENKYSEKNNNQDLYSEMSLYMESANNLYVEDDDLSFCFQVDTGTLPCVACGVLGFPFMSIVQPSERASKELLPAEQNHMVLDLVVVNPVPSHPPPELHCMVEGSIVSDGERGQDKVSTGKISSSCELPIKTTKSGIKLKFKNCGKTHVDASSICLEASDRTIPTESNFIHHPNDQSQVPGPNFLLPTKEVPVSSEVTVDKVWNTSSGNLRPRIFCLEHAIQIEEMLQSKGGANVLLICHSDFQKIKAHAATVAEEIGSSFSYKEIPLYDASKEDLNLINLAIESEEKDECDEDWTSKLNINMRHRVKLREVFPTEKEQQHALTLCGLFSDTTPSSSALSLEWKSKKFRSRRNSNHSDDSKAFESIPHEKEEVSGAKPDVPLGRKEDKIIQYSRRNFKSKRPGSAGASKGPGDACKLLPEEPSAVCSADRNENSRNTTETCTGKCEMQHEHHGLVKTWDQTENSVQSQVADPCIAVNPVIEIDAQMGNHMLDEAFMKDDKICDSTQDDFQLQHEDEVTEDIREKTDVCCSEISGGSPAVTAQVTENIEIERENQIAEEISMTSETCDVVVTMHDFEGRSEDVSVEEVFDHANSTSLDADETAVGNFDDPMDKTVQEANERKSNNEHGSDDGTLINKATSVSVEESLEVERESDTAEEMQSGGENCFLLEKRKPDRSKRKREVELQTEDQSGGFDGFIKSPCEGLRPRAGKDATPRSGTDKKRAVEDKPAMKKSRNRLVPPKDKKENRKGSCPHGCDIEGCRLKFKTKAELGLHKRNRCPHEGCGKKFRSHKYAVLHLRVHNDDRPLKCPWKGCKMSFKWAWARTEHLRVHTGERPYQCKVEGCGLTFRFVSDYSRHRRKTGHYVNIPN

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.938
	SRR3591706	second leaf	7.076
	SRR3591707	mature leaf	7.896
	SRR3591708	Shoot apex	9.761
	SRR3591709	Stem	7.345
	SRR3591710	White floral bud	8.291
	SRR3591711	White flower	9.025
	SRR3591712	Green floral bud	8.218
	SRR3591713	Yellow flower	6.326
SRP173429	SRR8316895	Juvenile bud stage	4.791
	SRR8316896	Juvenile bud stage	6.924
	SRR8316897	Juvenile bud stage	3.873
	SRR8316894	Third green stage	3.316
	SRR8316900	Third green stage	5.608
	SRR8316901	Third green stage	6.032
	SRR8316898	Complete white stage	1.759
	SRR8316899	Complete white stage	7.233
	SRR8316903	Complete white stage	4.831
	SRR8316902	Silver flowering stage	2.555
	SRR8316904	Silver flowering stage	4.430
	SRR8316905	Silver flowering stage	1.884
	SRR8316906	Gold flowering stage	6.151
	SRR8316907	Gold flowering stage	5.289
	SRR8316908	Gold flowering stage	5.561
SRP132670	SRR6706286	Control	5.085
	SRR6706287	Light intensity 50%	6.232
	SRR6706288	Light intensity 20%	5.703
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.359
	CNS0095593	Slightly white alabastrum(diploid) 2	3.820
	CNS0095594	Slightly white alabastrum(diploid) 3	3.440
	CNS0095595	Whole white alabastrum(diploid) 2	4.086
	CNS0095596	Whole white alabastrum(diploid) 3	2.780
	CNS0095597	Whole white alabastrum(diploid) 4	3.913
	CNS0095598	Silvery flower (diploied) 1	8.266
	CNS0095599	Silvery flower (diploied) 2	5.420
	CNS0095600	Silvery flower (diploied) 3	9.197
	CNS0095601	Golden flower (diploid) 1	6.048
	CNS0095602	Golden flower (diploid) 2	9.154
	CNS0095603	Golden flower (diploid) 3	9.202
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.464
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.618
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.459
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.225
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.389
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.573
	CNS0095610	Silvery flower (tetraploid) 1	7.204
	CNS0095611	Silvery flower (tetraploid) 2	8.080
	CNS0095612	Silvery flower (tetraploid) 3	7.147
	CNS0095613	Golden flower (tetraploid) 1	4.779
	CNS0095614	Golden flower (tetraploid) 2	6.287
	CNS0095615	Golden flower (tetraploid) 3	8.449
CRA001975	CRR073297	Stem 1	10.614
	CRR073298	Stem 2	8.501
	CRR073299	Stem 3	7.764
	CRR073300	Leaf 1	7.965
	CRR073301	Leaf 2	6.777
	CRR073302	Leaf 3	5.373
	CRR073303	Juvenile bud 1	4.597
	CRR073304	Juvenile bud 2	3.040
	CRR073305	Juvenile bud 3	8.450
	CRR073306	Third green 1	2.718
	CRR073307	Third green 2	1.680
	CRR073308	Third green 3	3.258
	CRR073309	Second white 1	2.485
	CRR073310	Second white 2	3.641
	CRR073311	Second white 3	4.279
	CRR073312	Silver flowering 1	2.582
	CRR073313	Silver flowering 2	4.038
	CRR073314	Silver flowering 3	2.412
	CRR073315	Gold flowering 1	3.193
	CRR073316	Gold flowering 2	6.107
	CRR073317	Gold flowering 3	2.417
	CRR073318	Tawny withering 1	4.676
	CRR073319	Tawny withering 2	4.051
	CRR073320	Tawny withering 3	3.833